chr3 : 179,882,352 179,882,837
485 bp 82 TFs 0 linked genes
This 485 bp open chromatin element has no linked target genes and is bound by 82 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:179,877,352 – 179,887,837
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 233 bp overlap
ARNT 1 dataset
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 203 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 297 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 440 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCFF521LQJ 353 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 159 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCFF521IZR 349 bp overlap
BRD4 5 datasets
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 320 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 244 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 283 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 193 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 231 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 222 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 209 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 177 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 178 bp overlap
CREB1 2 datasets
ChIP GM12878 ENCFF870CVH 351 bp overlap
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 174 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 151 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 209 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 232 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 228 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 70 bp overlap
EBF1 2 datasets
ChIP ASC GSE54889.EBF1.ASC 131 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 297 bp overlap
ESR1 3 datasets
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 159 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 311 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 402 bp overlap
ETV6 1 dataset
ChIP GM12878 GSE97661.ETV6.GM12878 307 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 236 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 196 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 180 bp overlap
ChIP GM12878 ENCFF824TGK 398 bp overlap
IRF4 2 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 129 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 210 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 191 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 247 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 116 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 136 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 183 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 199 bp overlap
MED1 3 datasets
ChIP GM12878 GSE93080.MED1.GM12878 214 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 218 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 164 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 202 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 379 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 375 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 252 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 349 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 229 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 271 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 308 bp overlap
ChIP hESC GSE18292.NANOG.hESC 152 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 379 bp overlap
NFKB1 2 datasets
ChIP L1236 GSE63736.NFKB1.L1236 303 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 120 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 397 bp overlap
NFYB 2 datasets
ChIP GM12878 ENCFF474DNH 342 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 259 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 204 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 232 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 398 bp overlap
NR2F1 1 dataset
ChIP GM12878 ENCFF273VKX 422 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 114 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 173 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 207 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 354 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 395 bp overlap
PML 2 datasets
ChIP GM12878 ENCFF160JQZ 471 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 248 bp overlap
POLR2A 4 datasets
ChIP GM12878 ENCFF263VRI 440 bp overlap
ChIP GM12878 ENCFF263VRI 150 bp overlap
ChIP Raji ENCFF613VGX 435 bp overlap
ChIP Raji ENCFF613VGX 366 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 441 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 232 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 257 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 165 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 244 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 229 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 245 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 153 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 403 bp overlap
RELA 43 datasets
ChIP 786-O GSE86092.RELA.786-O 222 bp overlap
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 112 bp overlap
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 280 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 331 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 448 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 329 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 366 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 380 bp overlap
ChIP GM10847 ENCSR000DYM.RELA.GM10847 215 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 359 bp overlap
ChIP GM12878 ENCSR664POU.RELA.GM12878 226 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 393 bp overlap
ChIP GM12892 ENCSR000EAN.RELA.GM12892 125 bp overlap
ChIP GM15510 ENCSR000EAQ.RELA.GM15510 152 bp overlap
ChIP GM18505 ENCSR000EAW.RELA.GM18505 205 bp overlap
ChIP GM18951 ENCSR000EBD.RELA.GM18951 153 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 280 bp overlap
ChIP GM19193 ENCSR000EBM.RELA.GM19193 175 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 378 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.RELA.LNCaP_DHT_TNFA 330 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 202 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 220 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 220 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 276 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 485 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 175 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 254 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 240 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 243 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 220 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 247 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 246 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 264 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 314 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 256 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 238 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 268 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 198 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 155 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 245 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 215 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 157 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 485 bp overlap
ChIP L1236 GSE63736.RELB.L1236 110 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 321 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMARCA4 3 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 292 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 266 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 424 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 171 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 180 bp overlap
SMARCC1 2 datasets
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 164 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 173 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 263 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 207 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 425 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 161 bp overlap
ChIP glioma_stem GSE67282.SOX2.glioma_stem 185 bp overlap
ChIP hESC GSE18292.SOX2.hESC 135 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 344 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 485 bp overlap
SP1 3 datasets
ChIP GM12878 ENCFF620LDJ 321 bp overlap
ChIP GM12878 ENCFF620LDJ 118 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 286 bp overlap
SPI1 1 dataset
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 120 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 130 bp overlap
TAF1 6 datasets
ChIP GM12878 ENCFF746UKX 235 bp overlap
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 132 bp overlap
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 121 bp overlap
ChIP H1 ENCFF478SZO 372 bp overlap
ChIP H1 ENCFF478SZO 392 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 193 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 485 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 122 bp overlap
TCF7 2 datasets
ChIP GM12878 ENCFF749DPM 365 bp overlap
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 193 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 108 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 108 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCFF978IGL 240 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 136 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 170 bp overlap
ZNF597 1 dataset
ChIP GM12878 GSE97661.ZNF597.GM12878 181 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap