chr3 : 173,913,450 – 173,914,733
1,283 bp 87 TFs 1 linked gene
This 1.3 kb open chromatin element is linked to NLGN1-AS1 and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NLGN1-AS1 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:173,908,450 – 173,919,733
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 215 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 574 bp overlap
BCL11A 5 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 82 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 68 bp overlap
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 163 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 105 bp overlap
BRD4 7 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 208 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 184 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 275 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 182 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 280 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 152 bp overlap
ChIP hESC GSE33281.BRD4.hESC 95 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 284 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 103 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 167 bp overlap
CHD4 3 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 96 bp overlap
ChIP 501-mel GSE134848.CHD4.501-mel 192 bp overlap
ChIP 501-mel GSE134848.CHD4.501-mel 198 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 877 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 219 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 201 bp overlap
CTCF 2 datasets
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 63 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 258 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 229 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 118 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 233 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 236 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 369 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 220 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 277 bp overlap
FOXA1 1 dataset
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 213 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 261 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 285 bp overlap
GATA1 11 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 188 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 158 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 305 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 297 bp overlap
ChIP erythroblast ENCFF867JAR 318 bp overlap
ChIP erythroblast ENCFF867JAR 342 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 467 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 140 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 256 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 219 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 386 bp overlap
GATA2 2 datasets
ChIP TF1 GSE73207.GATA2.TF1 302 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 235 bp overlap
GATA3 2 datasets
ChIP SK-N-SH ENCFF040SSB 160 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 137 bp overlap
GATA4 7 datasets
ChIP G296S GSE85628.GATA4.G296S 365 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 365 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 323 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 348 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 366 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 411 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 328 bp overlap
HDAC2 2 datasets
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 210 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 379 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 198 bp overlap
HEXIM1-CDK9 1 dataset
ChIP A-375 GSE68047.HEXIM1-CDK9.A-375 100 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 318 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 189 bp overlap
IRF1 1 dataset
ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 157 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 382 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 349 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 386 bp overlap
JUND 1 dataset
ChIP T47D ENCFF318BWX 135 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 168 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 181 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 165 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 296 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAX 5 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 110 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 241 bp overlap
ChIP WTC11 ENCFF223QFY 585 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 275 bp overlap
MED1 5 datasets
ChIP G296S GSE85628.MED1.G296S 310 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 310 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 293 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 247 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 232 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 250 bp overlap
ChIP K562 ENCFF320GSD 150 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 292 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 372 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 237 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 609 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 212 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 201 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 349 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 440 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 458 bp overlap
ChIP hESC GSE18292.NANOG.hESC 149 bp overlap
NFIC 3 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 211 bp overlap
ChIP SK-N-SH ENCFF965AKM 117 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 316 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 277 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 323 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 271 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 58 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 107 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 147 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 258 bp overlap
ChIP K562 ENCFF286KMN 323 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 248 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 126 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 236 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 255 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 613 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 316 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 123 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 240 bp overlap
RBPJ 4 datasets
ChIP GIC GSE79734.RBPJ.GIC 194 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 225 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 251 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 271 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 179 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 179 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SETX 1 dataset
ChIP A-549_Influenza_PR8_NS1 GSE52936.SETX.A-549_Influenza_PR8_NS1 116 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 124 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 280 bp overlap
SMARCA2 6 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 253 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 298 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 444 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 484 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 355 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 910 bp overlap
SMARCA4 14 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 671 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 348 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 210 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 66 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 355 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 1185 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 443 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 476 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 192 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 610 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 89 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 520 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 590 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 186 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 307 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 389 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 247 bp overlap
SOX2 10 datasets
ChIP HNSC GSE69479.SOX2.HNSC 83 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 922 bp overlap
ChIP LK2 GSE137459.SOX2.LK2 461 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 393 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 760 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 198 bp overlap
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 433 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 571 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 285 bp overlap
SOX8 3 datasets
ChIP RH4 GSE116344.SOX8.RH4 224 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 140 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 224 bp overlap
SPI1 1 dataset
ChIP KG-1 GSE128834.SPI1.KG-1 142 bp overlap
TAL1 9 datasets
ChIP CD34 GSE52924.TAL1.CD34 285 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 225 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 217 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 296 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 291 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 283 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 296 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 268 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 217 bp overlap
TAL1_SCL 1 dataset
ChIP Jurkat GSE25000.TAL1_SCL.Jurkat 135 bp overlap
TBX5 8 datasets
ChIP G296S GSE85628.TBX5.G296S 376 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 376 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 254 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 304 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 304 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 318 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 442 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 205 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 345 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 246 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 171 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 283 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 196 bp overlap
ZNF311 1 dataset
ChIP K-562 ENCSR388ZRV.ZNF311.K-562 709 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 190 bp overlap
ZNF507 1 dataset
ChIP K-562 ENCSR577KQD.ZNF507.K-562 151 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 249 bp overlap
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