chr3 : 164,459,620 164,460,195
575 bp 83 TFs 1 linked gene
This 575 bp open chromatin element is linked to ENSG00000289884 and is bound by 83 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000289884 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:164,454,620 – 164,465,195
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 15 datasets
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 160 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 187 bp overlap
ChIP VCaP GSE148358.AR.VCaP 395 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 264 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 436 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 264 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 524 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 424 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 314 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 151 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 233 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 229 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 326 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 356 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 100 bp overlap
ARID1A 3 datasets
ChIP 12Z GSE129781.ARID1A.12Z 93 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 287 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 105 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 513 bp overlap
ChIP K562 ENCFF938UXQ 408 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR613NUC.ARNT.K-562 264 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 178 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 355 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 232 bp overlap
BRD2 3 datasets
ChIP K-562 GSE140325.BRD2.K-562 107 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 219 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 219 bp overlap
BRD4 7 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 242 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 242 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 529 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 123 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 123 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 102 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 396 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 270 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 575 bp overlap
ChIP K562 ENCFF963TXY 292 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 575 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 343 bp overlap
ChIP K562 ENCFF673OEZ 431 bp overlap
CC2D1A 2 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 222 bp overlap
ChIP K562 ENCFF567XUT 440 bp overlap
CCNT2 2 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 182 bp overlap
ChIP K562 ENCFF199GSZ 415 bp overlap
CEBPB 3 datasets
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 204 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 115 bp overlap
ChIP K562 ENCFF194QGF 321 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 155 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 239 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 284 bp overlap
CTCF 1 dataset
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 71 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 342 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 303 bp overlap
ChIP K562 ENCFF775HUO 173 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 376 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 210 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 235 bp overlap
ChIP K562 ENCFF226VMS 317 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 184 bp overlap
ESR1 2 datasets
ChIP MCF-7-Luc_E2 GSE78284.ESR1.MCF-7-Luc_E2 174 bp overlap
ChIP T-47D ENCSR000BQD.ESR1.T-47D 169 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 345 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 292 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 141 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 283 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 449 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 407 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 379 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 136 bp overlap
ChIP DE DE-FOXA2-1 575 bp overlap
ChIP DE DE-FOXA2-2 543 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 305 bp overlap
FOXA3 2 datasets
ChIP K562 ENCFF348SOM 431 bp overlap
ChIP K562 ENCFF781VSC 341 bp overlap
FOXL2 1 dataset
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 253 bp overlap
FOXM1 2 datasets
ChIP K-562 ENCSR429QPP.FOXM1.K-562 323 bp overlap
ChIP K562 ENCFF255RHV 411 bp overlap
GATA1 14 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 100 bp overlap
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 92 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 324 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 276 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 97 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 182 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 61 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 310 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 167 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 240 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 279 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 570 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 560 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 178 bp overlap
ChIP ESF GSE108408.GATA2.ESF 139 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 471 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 201 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP K562 ENCFF830LLA 506 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 474 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 108 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 499 bp overlap
ChIP DE DE-GATA4-2 568 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 441 bp overlap
ChIP foregut GSE117136.GATA4.foregut 407 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 575 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 506 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 456 bp overlap
ChIP DE DE-GATA6-2 537 bp overlap
ChIP foregut GSE117136.GATA6.foregut 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 575 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 266 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 448 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 284 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 306 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 297 bp overlap
ChIP K562 ENCFF317JJX 475 bp overlap
HOXB13 4 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 239 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 157 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 257 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 190 bp overlap
ID3 2 datasets
ChIP K-562 ENCSR005NMT.ID3.K-562 446 bp overlap
ChIP K562 ENCFF170RNI 455 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 242 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 208 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 274 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 125 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 575 bp overlap
LEF1 1 dataset
ChIP K-562 ENCSR343ELW.LEF1.K-562 446 bp overlap
MED1 11 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 251 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 212 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 209 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 257 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 249 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 238 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 346 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 290 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 362 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 394 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 232 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 372 bp overlap
MTA2 3 datasets
ChIP K-562 ENCSR113LAS.MTA2.K-562 277 bp overlap
ChIP K562 ENCFF880VZB 191 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 569 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 170 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR658WFQ.NCOA1.K-562 253 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 437 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 365 bp overlap
ChIP K562 ENCFF788MPU 201 bp overlap
ChIP K562 ENCFF866HRM 281 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 118 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 329 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 247 bp overlap
ChIP K562 ENCFF167YID 186 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 345 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 410 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 169 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 220 bp overlap
PDX1 3 datasets
ChIP hESC GSE58685.PDX1.hESC 207 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 272 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 506 bp overlap
PGR_B 1 dataset
ChIP hESC GSE62475.PGR_B.hESC 228 bp overlap
PML 2 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 215 bp overlap
ChIP K562 ENCFF801LKH 505 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 161 bp overlap
RBBP4 3 datasets
ChIP RH5 GSE155861.RBBP4.RH5 170 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 259 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 138 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 123 bp overlap
SMAD3 3 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 207 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 261 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 326 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 428 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 270 bp overlap
ChIP K562 ENCFF506JCB 192 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 237 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 273 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 531 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 257 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 170 bp overlap
STAT3 2 datasets
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 153 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 158 bp overlap
STAT5A 3 datasets
ChIP K-562 ENCSR000BRR.STAT5A.K-562 185 bp overlap
ChIP K562 ENCFF226BTJ 341 bp overlap
ChIP K562 ENCFF226BTJ 196 bp overlap
TAL1 17 datasets
ChIP CD34 GSE52924.TAL1.CD34 256 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 259 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 213 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 569 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 508 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 295 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.TAL1.K-562_MYO1D-Hub_KO 191 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 271 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 331 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 321 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 433 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 386 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 269 bp overlap
ChIP K562 ENCFF620GMX 352 bp overlap
ChIP K562 ENCFF661CCK 181 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 282 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 221 bp overlap
TCF12 4 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 446 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 307 bp overlap
ChIP K562 ENCFF909RDY 100 bp overlap
ChIP K562 ENCFF931DJY 303 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 497 bp overlap
ChIP K562 ENCFF319QZT 205 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 252 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 350 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 247 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 228 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 142 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 273 bp overlap