chr3 : 156,761,057 – 156,761,397
340 bp 90 TFs 1 linked gene
This 340 bp open chromatin element is linked to LINC00886 and is bound by 90 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00886 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:156,756,057 – 156,766,397
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 134 bp overlap
BCL11A 1 dataset
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 265 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 196 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 340 bp overlap
BRD4 6 datasets
ChIP RH4 GSE83726.BRD4.RH4 305 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 340 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 319 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 222 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 226 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 237 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 329 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 323 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 266 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 327 bp overlap
CTCF 2 datasets
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 53 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 253 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 312 bp overlap
ChIP GM12878 ENCFF813OXE 219 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 288 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 221 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 340 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 244 bp overlap
EZH2 1 dataset
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 245 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 246 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 340 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 290 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 256 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 270 bp overlap
FOXA1 1 dataset
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 105 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 340 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 267 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 231 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 240 bp overlap
GATA1 3 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 85 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 126 bp overlap
GATA2 7 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 263 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 140 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 138 bp overlap
ChIP K562 ENCFF088XQT 300 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 251 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 135 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 266 bp overlap
ChIP DE DE-GATA4-2 307 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 275 bp overlap
ChIP DE DE-GATA6-2 340 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 340 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 340 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 340 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 325 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 340 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 340 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 236 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 340 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 340 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 340 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 332 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 340 bp overlap
HSF1 2 datasets
ChIP MO91 GSE45852.HSF1.MO91 319 bp overlap
ChIP MO91_27A_20UM GSE45852.HSF1.MO91_27A_20UM 175 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 340 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 334 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 235 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 301 bp overlap
JUND 1 dataset
ChIP K562 ENCFF830LVJ 281 bp overlap
KMT2A 2 datasets
ChIP IMS-M2_VTP GSE129636.KMT2A.IMS-M2_VTP 175 bp overlap
ChIP L826 GSE83671.KMT2A.L826 167 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 321 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 340 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 319 bp overlap
MED1 3 datasets
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 140 bp overlap
ChIP RH4 GSE83726.MED1.RH4 313 bp overlap
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 109 bp overlap
MEF2A 1 dataset
ChIP K-562 ENCSR000BNV.MEF2A.K-562 135 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 231 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 64 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 340 bp overlap
MTA2 5 datasets
ChIP GM12878 ENCFF615CWQ 340 bp overlap
ChIP GM12878 ENCFF615CWQ 137 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 276 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 275 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 196 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 230 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 259 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 340 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 242 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 243 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 178 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 193 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 340 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 206 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 315 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 137 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 188 bp overlap
NCOR1 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR1.OCI-Ly1 196 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 291 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 333 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 248 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 131 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 235 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 236 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 202 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 310 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 235 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 287 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 274 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 340 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 117 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 200 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 274 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 295 bp overlap
RUNX2 1 dataset
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 205 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 340 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 340 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 340 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 340 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 305 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 224 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 238 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 181 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 91 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 294 bp overlap
SMARCA4 4 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 135 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 296 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 133 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 253 bp overlap
SMARCC1 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 289 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 219 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 162 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 263 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 239 bp overlap
SP7 3 datasets
ChIP HEK293 ENCFF733RBE 340 bp overlap
ChIP HEK293 ENCFF733RBE 334 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 340 bp overlap
SPI1 1 dataset
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 79 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 300 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 317 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 251 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 128 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE15780.TP53.SaOS-2 293 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 57 bp overlap
TP73_DELTANP 1 dataset
ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 340 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 340 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 268 bp overlap
ZBTB12 2 datasets
ChIP HEK293 ENCFF963HPT 153 bp overlap
ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 336 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 159 bp overlap
ZBTB6 3 datasets
ChIP HEK293 ENCFF881ECZ 187 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 319 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 248 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 323 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 274 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 179 bp overlap
ZNF680 3 datasets
ChIP HEK293 ENCFF418WHE 283 bp overlap
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 236 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 230 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 331 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 305 bp overlap
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