chr3 : 140,931,007 – 140,931,441
434 bp 94 TFs 0 linked genes
This 434 bp open chromatin element has no linked target genes and is bound by 94 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:140,926,007 – 140,936,441
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 137 bp overlap
Ahr::Arnt 3 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCL6B 2 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
Bcl11B 2 datasets
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 148 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 164 bp overlap
ChIP H1 ENCFF955PMP 267 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 166 bp overlap
CTCF 1 dataset
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 141 bp overlap
CTCFL 2 datasets
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 191 bp overlap
DDX21 3 datasets
ChIP A-375 GSE128080.DDX21.A-375 207 bp overlap
ChIP A-375_1726 GSE128080.DDX21.A-375_1726 118 bp overlap
ChIP A-375_1726plus GSE128080.DDX21.A-375_1726plus 247 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif ES_0h ES_0h-EBF1_MA0154.5 11 bp overlap
EBF3 2 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif ES_0h ES_0h-EBF3_MA1637.2 9 bp overlap
EGR1 3 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
ChIP H1 ENCFF451BLH 215 bp overlap
ChIP H1 ENCFF451BLH 261 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 353 bp overlap
EGR3 2 datasets
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
ESR1 1 dataset
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 294 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 119 bp overlap
Ebf2 2 datasets
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
FOXA1 5 datasets
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 201 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 88 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 188 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 96 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 165 bp overlap
FOXA2 1 dataset
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 268 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 178 bp overlap
HCFC1 3 datasets
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 131 bp overlap
ChIP K-562 ENCSR000EFN.HCFC1.K-562 147 bp overlap
ChIP K562 ENCFF959WVM 238 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 176 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 128 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 197 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 278 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 349 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 252 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 214 bp overlap
KLF1 5 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
ChIP HEK293 ENCFF159QSW 156 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 434 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 179 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 191 bp overlap
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 198 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
MYCN 1 dataset
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 206 bp overlap
NFIL3 2 datasets
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 380 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 186 bp overlap
PHOX2A 2 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PLAG1 2 datasets
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 434 bp overlap
ChIP H1 ENCFF566JSR 434 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 400 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 1 dataset
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 149 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 53 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 355 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 108 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 100 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 249 bp overlap
SIX5 5 datasets
ChIP GM12878 ENCFF766FEJ 173 bp overlap
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 150 bp overlap
ChIP H1 ENCFF942SOJ 176 bp overlap
ChIP K-562 ENCSR000BNW.SIX5.K-562 131 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 187 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SP1 1 dataset
ChIP HEK293T ERP007114.SP1.HEK293T 378 bp overlap
SP2 1 dataset
ChIP HEK293T ERP007114.SP2.HEK293T 193 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 339 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 409 bp overlap
SP4 4 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
ChIP HEK293 GSE76494.SP4.HEK293 201 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 334 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 308 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 410 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 307 bp overlap
TAF2 1 dataset
ChIP hESC GSE17917.TAF2.hESC 115 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 115 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 200 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 196 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 227 bp overlap
THAP11 2 datasets
ChIP HEK293 GSE138205.THAP11.HEK293 337 bp overlap
ChIP HepG2 ENCFF272SWH 326 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 164 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 124 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 233 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 285 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 396 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 143 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 121 bp overlap
ZKSCAN5 3 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 17 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 174 bp overlap
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 170 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 161 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 147 bp overlap
ChIP HEK293T GSE39263.ZNF143.HEK293T 171 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 172 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 136 bp overlap
ChIP K-562 GSE39263.ZNF143.K-562 174 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 289 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 305 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 394 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 419 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 391 bp overlap
ChIP WTC11 ENCFF249JUK 153 bp overlap
ZNF263 3 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 136 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 434 bp overlap
ZNF341 5 datasets
ChIP HEK293 ENCFF944VMC 197 bp overlap
ChIP HEK293 ENCFF944VMC 403 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 434 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 154 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 150 bp overlap
ZNF350 1 dataset
ChIP HEK293 GSE76494.ZNF350.HEK293 167 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 118 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 237 bp overlap
ZNF669 2 datasets
Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap
Motif ES_0h ES_0h-ZNF669_MA1985.1 15 bp overlap
ZNF76 4 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
ChIP HEK293 ENCSR072LQF.ZNF76.HEK293 434 bp overlap
ChIP HEK293 GSE76494.ZNF76.HEK293 185 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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