chr3 : 139,538,922 139,539,125
203 bp 75 TFs 1 linked gene
This 203 bp open chromatin element is linked to RBP1 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RBP1 616 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:139,533,922 – 139,544,125
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 203 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 203 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 190 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 116 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 153 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 141 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 203 bp overlap
BRD4 5 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 144 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 203 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 203 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 91 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 152 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 202 bp overlap
CEBPB 2 datasets
ChIP IMR-90 ENCFF468UGY 126 bp overlap
ChIP monocyte GSE98367.CEBPB.monocyte 102 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 145 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 189 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 83 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 115 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 111 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 171 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 139 bp overlap
CTCF 3 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 83 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 203 bp overlap
ChIP islet ERP004003.CTCF.islet 79 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 168 bp overlap
ChIP BLaER1 ENCFF364PUR 158 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 203 bp overlap
ESR1 1 dataset
ChIP T-47D GSE148277.ESR1.T-47D 125 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 203 bp overlap
EZH2 5 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 203 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 203 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 107 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 203 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 203 bp overlap
GLIS2 1 dataset
ChIP HCT-116_DMSO GSE125927.GLIS2.HCT-116_DMSO 203 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 175 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE107730.INO80.Hep-G2 203 bp overlap
ChIP Hep-G2 GSE97411.INO80.Hep-G2 203 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 203 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 203 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 192 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 203 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 203 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 203 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 145 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 112 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 203 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 203 bp overlap
MED12 1 dataset
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 86 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 81 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 203 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 57 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 203 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 203 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 169 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 203 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 203 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 74 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 203 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 189 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 203 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 203 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 203 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 203 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 203 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 137 bp overlap
POLR2A 10 datasets
ChIP adrenal gland ENCFF843OBJ 203 bp overlap
ChIP body of pancreas ENCFF727UBE 203 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 199 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 203 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 203 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 147 bp overlap
ChIP ovary ENCFF425PQK 203 bp overlap
ChIP sigmoid colon ENCFF754JQR 191 bp overlap
ChIP stomach ENCFF278MYS 144 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 203 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 90 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 203 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 203 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 168 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 92 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 203 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 177 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 203 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 203 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 152 bp overlap
SMARCA4 2 datasets
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 203 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 161 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 203 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 185 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 161 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 104 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 96 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 203 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 138 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 83 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 120 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 170 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 203 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 125 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 203 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 84 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 55 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 203 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 201 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 65 bp overlap