chr1 : 63,320,118 63,320,808
690 bp 76 TFs 4 linked genes
This 690 bp open chromatin element is linked to 4 target genes and is bound by 76 transcription factors.
Linked Genes
4 genes
Distance
Gene Expression Dist. to TSS Distance Link type
FOXD3-AS1 856 bp At TSS Proximity
FOXD3 1.8 kb Proximal Proximity
LINC00466 2.9 kb Proximal Proximity
MIR6068 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:63,315,118 – 63,325,808
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 183 bp overlap
AR 2 datasets
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 220 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 73 bp overlap
ChIP H1 ENCFF399KAM 337 bp overlap
ATF1 1 dataset
ChIP WTC11 ENCFF354DFT 423 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 285 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 453 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 690 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 650 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 349 bp overlap
BRD2 2 datasets
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 255 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 329 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 262 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 349 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 228 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 385 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 400 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 434 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 93 bp overlap
ChIP hESC GSE133412.CBX7.hESC 162 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 149 bp overlap
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 690 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 182 bp overlap
CTCF 3 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 322 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 313 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 211 bp overlap
EED 2 datasets
ChIP ProEs GSE59087.EED.ProEs 355 bp overlap
ChIP ProEs GSE59087.EED.ProEs 149 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 249 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 136 bp overlap
EZH2 38 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 160 bp overlap
ChIP A673 ENCFF790MVL 126 bp overlap
ChIP A673 ENCFF955JRZ 126 bp overlap
ChIP GM12878 ENCFF635TDF 272 bp overlap
ChIP GM23248 ENCFF404ZHM 597 bp overlap
ChIP GM23248 ENCFF506FWX 256 bp overlap
ChIP GM23338 ENCFF613YON 254 bp overlap
ChIP H1 ENCFF232NZA 340 bp overlap
ChIP H1 ENCFF232NZA 552 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 683 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 345 bp overlap
ChIP HepG2 ENCFF912EIW 219 bp overlap
ChIP HepG2 ENCFF912EIW 438 bp overlap
ChIP HepG2 ENCFF912EIW 671 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 198 bp overlap
ChIP SK-N-SH ENCFF657FZK 183 bp overlap
ChIP SK-N-SH ENCFF657FZK 431 bp overlap
ChIP astrocyte ENCFF365JTP 690 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 131 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 150 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 690 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 690 bp overlap
ChIP fibroblast of lung ENCFF479BAW 76 bp overlap
ChIP fibroblast of lung ENCFF479BAW 202 bp overlap
ChIP fibroblast of lung ENCFF479BAW 578 bp overlap
ChIP fibroblast of lung ENCFF479BAW 516 bp overlap
ChIP hepatocyte ENCFF118DKH 224 bp overlap
ChIP hepatocyte ENCFF552DZB 690 bp overlap
ChIP keratinocyte ENCFF070STK 557 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 415 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 202 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 190 bp overlap
ChIP myotube ENCFF857GWB 98 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 690 bp overlap
ChIP neural progenitor cell ENCFF472NFV 690 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 211 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 61 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 151 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 290 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 167 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 474 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 156 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 461 bp overlap
JARID2 6 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 379 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 690 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 651 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 208 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 608 bp overlap
ChIP hESC GSE133412.JARID2.hESC 106 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 112 bp overlap
KDM1A 2 datasets
ChIP SKNO-1_DMSO GSE71739.KDM1A.SKNO-1_DMSO 98 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 225 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 335 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KMT2A 2 datasets
ChIP THP-1 GSE83671.KMT2A.THP-1 172 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 334 bp overlap
MYC 1 dataset
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 301 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 539 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 594 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 238 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 254 bp overlap
NKX2-1 2 datasets
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 51 bp overlap
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 55 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 301 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 106 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 159 bp overlap
ChIP spleen ENCFF706IUS 281 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 547 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 275 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 249 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 315 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 252 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 344 bp overlap
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
RAD21 1 dataset
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 153 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 119 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 354 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 589 bp overlap
RBM39 1 dataset
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 197 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 355 bp overlap
ChIP SGBS GSE64233.RELA.SGBS 174 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 676 bp overlap
RNF2 8 datasets
ChIP H1 ENCFF239FFS 611 bp overlap
ChIP H1 ENCFF239FFS 215 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 63 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 69 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 55 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 94 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 476 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 628 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 422 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 284 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 214 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 281 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 209 bp overlap
SMAD2-3 6 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 498 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 520 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 125 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 423 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 72 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 297 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 52 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 396 bp overlap
SMARCA4 4 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 371 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 94 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 112 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 246 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 643 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 307 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 274 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 245 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 167 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 305 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 298 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 690 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 690 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 162 bp overlap
SUZ12 16 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 596 bp overlap
ChIP H1 ENCFF881NFR 690 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 96 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 155 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 148 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 173 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 126 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 124 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 93 bp overlap
ChIP NT2/D1 ENCFF574SXS 687 bp overlap
ChIP NT2/D1 ENCFF574SXS 515 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 605 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 251 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 174 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 166 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 373 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 227 bp overlap
TBP 2 datasets
ChIP hESC_2h GSE122298.TBP.hESC_2h 185 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 545 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 685 bp overlap
TRIM24 1 dataset
ChIP LNCaP_ETOH GSE69331.TRIM24.LNCaP_ETOH 298 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 213 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 300 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 398 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 617 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 413 bp overlap
ZNF506 1 dataset
ChIP HEK293T GSE78099.ZNF506.HEK293T 323 bp overlap
ZNF558 1 dataset
ChIP HEK293T GSE78099.ZNF558.HEK293T 290 bp overlap
ZNF777 1 dataset
ChIP HepG2 ENCFF362XDA 50 bp overlap