chr3 : 119,679,960 – 119,680,195
235 bp 73 TFs 1 linked gene
This 235 bp open chromatin element is linked to COX17 and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
COX17 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:119,674,960 – 119,685,195
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 220 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 172 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 111 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 235 bp overlap
ChIP K562 ENCFF938UXQ 235 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 235 bp overlap
BRD4 5 datasets
ChIP BE2C GSE80151.BRD4.BE2C 235 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 149 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 214 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 235 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 235 bp overlap
CBX2 1 dataset
ChIP K-562_HS GSE121182.CBX2.K-562_HS 218 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 136 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 160 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 119 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 140 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 161 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 235 bp overlap
ChIP K562 ENCFF403WPG 235 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 179 bp overlap
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 206 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 215 bp overlap
ChIP K562 ENCFF775HUO 235 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 210 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 235 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 235 bp overlap
ESR1 17 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 208 bp overlap
ChIP MCF-7 GSE128445.ESR1.MCF-7 232 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 235 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 202 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 235 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 223 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 235 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 202 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 235 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 188 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 235 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 160 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 160 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 192 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 192 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 235 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 195 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 231 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 235 bp overlap
FOXA1 1 dataset
ChIP MCF-7 GSE81714.FOXA1.MCF-7 202 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 235 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 235 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 188 bp overlap
GATA1 12 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 116 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 141 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 235 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 207 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.GATA1.K-562_MYO1D-Hub_KO 216 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 219 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 226 bp overlap
ChIP K562 ENCFF094CMK 217 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 235 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 188 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 201 bp overlap
GATA2 17 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 214 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 235 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 155 bp overlap
ChIP K562 ENCFF513FTZ 197 bp overlap
ChIP K562 ENCFF830LLA 235 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 167 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 167 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 235 bp overlap
ChIP SH-SY5Y ENCFF485YIB 235 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 235 bp overlap
ChIP SK-N-SH ENCFF764OZD 235 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 235 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 181 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 235 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 178 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 228 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 210 bp overlap
GATA3 15 datasets
ChIP BE2C GSE65664.GATA3.BE2C 235 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
ChIP MCF-7 ENCFF437NQS 235 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 207 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 196 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 226 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 159 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 88 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 150 bp overlap
ChIP SH-SY5Y ENCFF475HYF 235 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 235 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 227 bp overlap
ChIP SK-N-SH ENCFF040SSB 192 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 170 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 225 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 185 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 98 bp overlap
ChIP DE DE-GATA4-1 235 bp overlap
ChIP DE DE-GATA4-2 235 bp overlap
ChIP foregut GSE117136.GATA4.foregut 235 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 235 bp overlap
ChIP DE DE-GATA6-2 235 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 165 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 235 bp overlap
ChIP foregut GSE117136.GATA6.foregut 205 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 206 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 224 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 235 bp overlap
ChIP K562 ENCFF968WBH 199 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 181 bp overlap
ChIP K562 ENCFF055GAZ 235 bp overlap
ChIP K562 ENCFF317JJX 235 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 235 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 153 bp overlap
ChIP K562 ENCFF830LVJ 235 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 128 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 215 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 235 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR163IUV.MAZ.K-562 176 bp overlap
MED1 2 datasets
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 130 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 54 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 73 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 205 bp overlap
NR2C2 2 datasets
ChIP K562 ENCFF750AXF 235 bp overlap
ChIP K562 ENCFF750AXF 235 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 232 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 121 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 189 bp overlap
RAD21 4 datasets
ChIP K562 ENCFF066JWO 235 bp overlap
ChIP K562 ENCFF634XYR 235 bp overlap
ChIP MDM_H5N1 GSE103477.RAD21.MDM_H5N1 65 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 167 bp overlap
RCOR1 3 datasets
ChIP K562 ENCFF216EEJ 235 bp overlap
ChIP SK-N-SH ENCFF518EXB 235 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 185 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 149 bp overlap
REST 2 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 235 bp overlap
ChIP K562 ENCFF688UKW 235 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR076YPO.RNF2.K-562 147 bp overlap
RUNX1_mut 1 dataset
ChIP CD34 GSE111917.RUNX1_mut.CD34 187 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 235 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 230 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 179 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 213 bp overlap
SMARCC1 1 dataset
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 231 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 209 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 138 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 235 bp overlap
ChIP K562 ENCFF059YCJ 235 bp overlap
SPI1 9 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 129 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 169 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 212 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 190 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 206 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 145 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 161 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 132 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 136 bp overlap
SRF 1 dataset
ChIP K-562 ENCSR582IAO.SRF.K-562 208 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 185 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 165 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 177 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 235 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 222 bp overlap
TFAP2C 3 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 208 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 215 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 209 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 142 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 235 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 195 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 132 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 214 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 235 bp overlap
ZFX 1 dataset
ChIP K-562 ENCSR920ASP.ZFX.K-562 197 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 235 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
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