chr3 : 105,354,300 105,354,808
508 bp 86 TFs 0 linked genes
This 508 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:105,349,300 – 105,359,808
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 3 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 224 bp overlap
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 308 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 116 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 188 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 202 bp overlap
ChIP H1 ENCFF399KAM 454 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 349 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 137 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 385 bp overlap
BRD4 4 datasets
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 183 bp overlap
ChIP Hs-352-Sk GSE83725.BRD4.Hs-352-Sk 248 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 272 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 304 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 216 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 146 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF403LNW 157 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 185 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 352 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
ELF3 2 datasets
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 346 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 285 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 143 bp overlap
EZH2 1 dataset
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 225 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 303 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 265 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 142 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 338 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 392 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 68 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 297 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 248 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 99 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MED1 6 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 298 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 396 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 470 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 303 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 315 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 399 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 153 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 508 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 399 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 362 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 154 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NIPBL 2 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 335 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 229 bp overlap
NR3C1 15 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 325 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 172 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 465 bp overlap
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 507 bp overlap
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 350 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 260 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 303 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 294 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 138 bp overlap
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 345 bp overlap
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 371 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 88 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 158 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 301 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 266 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PGR 8 datasets
ChIP AB32 GSE31129.PGR.AB32 302 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 311 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 208 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 288 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 373 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 359 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 249 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 289 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 75 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 506 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 193 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 250 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 261 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 287 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RAD21 7 datasets
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 322 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 422 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 200 bp overlap
ChIP MDM GSE103477.RAD21.MDM 408 bp overlap
ChIP MDM_IFNb GSE103477.RAD21.MDM_IFNb 235 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 503 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 463 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 166 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 463 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 508 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 508 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 397 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 354 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 329 bp overlap
SMAD3 3 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 508 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 260 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 234 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 292 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 329 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 239 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 209 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 237 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 324 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 477 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 309 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 218 bp overlap
STAT3 1 dataset
ChIP A139 GSE85579.STAT3.A139 229 bp overlap
SUZ12 2 datasets
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 273 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 265 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116_C18 GSE127960.TCF7L2.HCT-116_C18 216 bp overlap
TEAD1 3 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 333 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 229 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 6 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 329 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 83 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 169 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 146 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 508 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 378 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 212 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 199 bp overlap
YY1AP1 2 datasets
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 161 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 262 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCFF262GZJ 164 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 338 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 100 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 189 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap