chr1 : 59,295,673 59,296,106
433 bp 80 TFs 2 linked genes
This 433 bp open chromatin element is linked to FGGY-DT and FGGY and is bound by 80 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
FGGY-DT 384 bp At TSS Proximity
FGGY 904 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:59,290,673 – 59,301,106
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 241 bp overlap
ChIP K562 ENCFF938UXQ 136 bp overlap
ATF4 1 dataset
ChIP HepG2 ENCFF903ADR 252 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 82 bp overlap
BRD4 9 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 68 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 433 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 145 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 88 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 144 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 398 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 265 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 156 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 229 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 314 bp overlap
ChIP K562 ENCFF963TXY 160 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 344 bp overlap
ChIP K562 ENCFF673OEZ 276 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 230 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 108 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 119 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 164 bp overlap
CTCF 4 datasets
ChIP GP5D GSE51234.CTCF.GP5D 167 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 111 bp overlap
ChIP heart right ventricle ENCFF725NNJ 218 bp overlap
ChIP transverse colon ENCFF077CMZ 96 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 110 bp overlap
E2F6 2 datasets
ChIP A549 ENCFF550XVR 433 bp overlap
ChIP A549 ENCFF550XVR 151 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF886KFV 433 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 317 bp overlap
ELF4 1 dataset
Motif DE_72h DE_72h-ELF4_MA0641.1 12 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF472NFV 222 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 6 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 223 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 189 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 127 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 306 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 66 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 174 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 295 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 269 bp overlap
ChIP DE DE-FOXA2-1 433 bp overlap
ChIP DE DE-FOXA2-2 416 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 382 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXF2 1 dataset
Motif DE_72h DE_72h-FOXF2_MA0030.2 9 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
Foxj3 1 dataset
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 58 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 175 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 239 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 169 bp overlap
GATA2 3 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 163 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 404 bp overlap
ChIP DE DE-GATA4-2 433 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 303 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 390 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 343 bp overlap
ChIP DE DE-GATA6-2 390 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP foregut GSE117136.GATA6.foregut 297 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 283 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 333 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 112 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 221 bp overlap
ChIP K562 ENCFF744ALD 373 bp overlap
HOXB13 2 datasets
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 258 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 246 bp overlap
Hmx2 1 dataset
Motif DE_72h DE_72h-Hmx2_MA0897.2 15 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 394 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 382 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 117 bp overlap
ISL2 1 dataset
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP A549 ENCFF191QZG 245 bp overlap
KDM1A 3 datasets
ChIP K-562 GSE117944.KDM1A.K-562 221 bp overlap
ChIP K562 ENCFF128TYE 371 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 324 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 69 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 144 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 183 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 171 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 202 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 328 bp overlap
NCOA1 1 dataset
ChIP HepG2 ENCFF624JES 203 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF788MPU 368 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 123 bp overlap
Nkx3-2 1 dataset
Motif DE_72h DE_72h-Nkx3-2_MA0122.4 10 bp overlap
PHIP 6 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 402 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 402 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 433 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 433 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 433 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 433 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 359 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 186 bp overlap
RAD21 5 datasets
ChIP HCT116 ENCFF568PEO 214 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 87 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 182 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 165 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 97 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 295 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 224 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 162 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 298 bp overlap
SNAI2 5 datasets
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 124 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.SNAI2.PC-9_2DF_DMSO 246 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 323 bp overlap
ChIP keratinocyte_SHCTR GSE55421.SNAI2.keratinocyte_SHCTR 231 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 301 bp overlap
STAT1 3 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 323 bp overlap
ChIP FaDu_DMSO GSE78212.STAT1.FaDu_DMSO 433 bp overlap
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 350 bp overlap
TAL1 10 datasets
ChIP K-562 GSE107726.TAL1.K-562 343 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 270 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 176 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 222 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 230 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 224 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 308 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 219 bp overlap
ChIP K562 ENCFF620GMX 208 bp overlap
ChIP K562 ENCFF661CCK 233 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 274 bp overlap
ChIP K562 ENCFF931DJY 151 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 292 bp overlap
ChIP K562 ENCFF319QZT 312 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 304 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZBTB40 2 datasets
ChIP GM12878 ENCFF346DYM 128 bp overlap
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 75 bp overlap
ZEB1 2 datasets
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 433 bp overlap
ZEB2 4 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 296 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 344 bp overlap
ChIP K562 ENCFF795CMH 290 bp overlap
ChIP K562 ENCFF975RXS 128 bp overlap
ZNF34 2 datasets
ChIP HEK293 ENCFF481TFV 141 bp overlap
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 71 bp overlap
ZNF677 1 dataset
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap