chr3 : 72,452,711 – 72,452,966
255 bp 67 TFs 1 linked gene
This 255 bp open chromatin element is linked to RYBP and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RYBP 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:72,447,711 – 72,457,966
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 230 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 108 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 255 bp overlap
ChIP K562 ENCFF938UXQ 255 bp overlap
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 255 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 167 bp overlap
BHLHE40 5 datasets
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 140 bp overlap
ChIP Hep-G2 ENCSR000BID.BHLHE40.Hep-G2 65 bp overlap
ChIP HepG2 ENCFF961RID 148 bp overlap
ChIP K-562 ENCSR000EGV.BHLHE40.K-562 83 bp overlap
ChIP K562 ENCFF923NJI 155 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 225 bp overlap
ChIP K562 ENCFF963TXY 244 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 255 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 145 bp overlap
ChIP K562 ENCFF673OEZ 169 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 255 bp overlap
CEBPA 3 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 104 bp overlap
ChIP HepG2 ENCFF175DFS 83 bp overlap
ChIP liver ERP002306.CEBPA.liver 119 bp overlap
CEBPB 5 datasets
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 91 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 118 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 83 bp overlap
ChIP K562 ENCFF189VBN 147 bp overlap
ChIP K562 ENCFF194QGF 179 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 174 bp overlap
CREB1 2 datasets
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 104 bp overlap
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 53 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 255 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 206 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 165 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 150 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 150 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 255 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 177 bp overlap
FOSL1 2 datasets
ChIP K562 ENCFF455MKD 238 bp overlap
ChIP K562 ENCFF455MKD 255 bp overlap
FOXA2 1 dataset
ChIP liver ENCFF877SFI 172 bp overlap
GATA1 7 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 65 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 67 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 255 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 191 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 184 bp overlap
ChIP K562 ENCFF094CMK 244 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 196 bp overlap
GATA2 6 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 205 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 119 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 139 bp overlap
ChIP K562 ENCFF544PCK 248 bp overlap
ChIP K562 ENCFF830LLA 255 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 219 bp overlap
GATA3 1 dataset
ChIP WA09 GSE105081.GATA3.WA09 168 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 255 bp overlap
ChIP DE DE-GATA4-2 255 bp overlap
ChIP foregut GSE117136.GATA4.foregut 255 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 255 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 228 bp overlap
ChIP DE DE-GATA6-1 255 bp overlap
ChIP DE DE-GATA6-2 255 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 255 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 255 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 255 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 255 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 255 bp overlap
ChIP foregut GSE117136.GATA6.foregut 255 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 255 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 121 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 228 bp overlap
ChIP K562 ENCFF968WBH 255 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 199 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 121 bp overlap
ChIP liver ENCFF449HPV 94 bp overlap
ChIP liver ERP002306.HNF4A.liver 150 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 105 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 255 bp overlap
JUND 3 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 131 bp overlap
ChIP liver ENCFF007WWT 168 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 116 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 163 bp overlap
ChIP K562 ENCFF320EQC 255 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 186 bp overlap
MAX 9 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 118 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 95 bp overlap
ChIP HepG2 ENCFF479OHI 255 bp overlap
ChIP HepG2 ENCFF507HCX 255 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 91 bp overlap
ChIP liver ENCFF092GVW 255 bp overlap
ChIP liver ENCFF584QGB 234 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 173 bp overlap
ChIP liver ENCSR521IID.MAX.liver 124 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 255 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 56 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 57 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 107 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF163BSI 133 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 252 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 112 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 220 bp overlap
ChIP K562 ENCFF221HJH 255 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 255 bp overlap
ONECUT1 2 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 104 bp overlap
ChIP liver ERP002306.ONECUT1.liver 103 bp overlap
POLR2A 1 dataset
ChIP right lobe of liver ENCFF026NCK 255 bp overlap
PPARG 2 datasets
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 194 bp overlap
ChIP HepG2 ENCFF329FBJ 226 bp overlap
PRDM10 4 datasets
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 207 bp overlap
ChIP HepG2 ENCFF324FNA 142 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 255 bp overlap
ChIP K562 ENCFF740YLK 242 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 201 bp overlap
ChIP liver ENCFF522JHE 235 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 255 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 152 bp overlap
REST 3 datasets
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 113 bp overlap
ChIP liver ENCFF240FWT 255 bp overlap
ChIP liver ENCSR867WPH.REST.liver 143 bp overlap
RXRA 3 datasets
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 105 bp overlap
ChIP liver ENCFF077DAP 132 bp overlap
ChIP liver ENCFF807CIA 180 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 255 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 255 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 171 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 159 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 164 bp overlap
TAL1 7 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 208 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 200 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 120 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 185 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 150 bp overlap
ChIP K562 ENCFF620GMX 255 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 215 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 171 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 255 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 240 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 71 bp overlap
USF1 1 dataset
ChIP K-562 ENCSR000BKT.USF1.K-562 94 bp overlap
YY1 1 dataset
ChIP liver ENCFF400MBC 135 bp overlap
ZBTB21 1 dataset
ChIP Hep-G2 ENCSR549PAU.ZBTB21.Hep-G2 69 bp overlap
ZBTB33 1 dataset
ChIP liver ENCSR516HUP.ZBTB33.liver 107 bp overlap
ZBTB7A 3 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 255 bp overlap
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 99 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 133 bp overlap
ZNF232 1 dataset
ChIP Hep-G2 ENCSR837GLU.ZNF232.Hep-G2 99 bp overlap
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