chr1 : 48,051,694 – 48,052,373
679 bp 82 TFs 4 linked genes
This 679 bp open chromatin element is linked to 4 target genes and is bound by 82 transcription factors.
Linked Genes
4 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRABD2B 54.7 kb Distal Multiome+HiCAR
ENSG00000290466 75.8 kb Distal Multiome
ENSG00000291246 130.3 kb Distal Multiome
SLC5A9 170.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:48,046,694 – 48,057,373
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 151 bp overlap
ChIP 12Z GSE129781.ARID1A.12Z 182 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 262 bp overlap
BRD4 3 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 260 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 264 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 260 bp overlap
BRD9 1 dataset
ChIP Mel270 GSE124720.BRD9.Mel270 164 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 110 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 109 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 78 bp overlap
ELF1 2 datasets
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 213 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 199 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 306 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 90 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 73 bp overlap
EZH2 5 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 96 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 462 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 55 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 275 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 129 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 83 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 276 bp overlap
ChIP DE DE-GATA4-2 555 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 335 bp overlap
ChIP DE DE-GATA6-2 590 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 626 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 679 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 613 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 589 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 679 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 632 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 283 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 449 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 93 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 62 bp overlap
HIF1A 2 datasets
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 96 bp overlap
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 156 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 276 bp overlap
IRF4 2 datasets
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 174 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 124 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 504 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 324 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 526 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 618 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 464 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 660 bp overlap
KLF1 4 datasets
ChIP HEK293 ENCFF159QSW 91 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 289 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 67 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 65 bp overlap
KLF10 3 datasets
ChIP HEK293 ENCFF326EGX 239 bp overlap
ChIP HEK293 ENCFF326EGX 464 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 272 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 81 bp overlap
ChIP HEK293 ENCFF658MHR 118 bp overlap
KLF9 3 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 75 bp overlap
ChIP HEK293 ENCFF588INF 262 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 187 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 154 bp overlap
KMT2C 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 64 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 66 bp overlap
KMT2D 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 311 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 108 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 353 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 283 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 120 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 147 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 62 bp overlap
MED26 1 dataset
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 88 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 304 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 196 bp overlap
MYOD1 1 dataset
ChIP RD GSE137168.MYOD1.RD 113 bp overlap
NR3C1 1 dataset
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 81 bp overlap
NRF1 2 datasets
ChIP HCC1954 GSE67867.NRF1.HCC1954 107 bp overlap
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 106 bp overlap
OSR2 4 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 281 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 195 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 80 bp overlap
PATZ1 3 datasets
ChIP HEK293 ENCFF016MNJ 125 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 179 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 165 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 571 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 136 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 79 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 60 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 345 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 126 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 287 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 658 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 679 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 679 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 679 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 679 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 623 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 679 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 82 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 263 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 330 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 87 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 115 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 118 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 401 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 133 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 515 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 102 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 182 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 386 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 80 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 535 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 455 bp overlap
SPIB 2 datasets
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 216 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 273 bp overlap
STAT3 4 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 223 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 324 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 174 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 394 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 205 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 306 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 202 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 266 bp overlap
TARDBP 3 datasets
ChIP K-562 GSE120104.TARDBP.K-562 169 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 60 bp overlap
ChIP K-562 ENCSR429XTR.TARDBP.K-562 54 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 51 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 311 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 151 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 169 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 215 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 433 bp overlap
YY1AP1 1 dataset
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 96 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 131 bp overlap
ZBTB20 4 datasets
ChIP HEK293 ENCFF524ADK 308 bp overlap
ChIP HEK293 ENCFF524ADK 108 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 239 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 134 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 164 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 90 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 72 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 54 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 81 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 69 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 53 bp overlap
ZNF223 1 dataset
ChIP HEK293 ENCFF408UAU 85 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 72 bp overlap
ZNF324 1 dataset
ChIP HEK293 ENCSR768HOH.ZNF324.HEK293 67 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 118 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 100 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 357 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 61 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 102 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 121 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 104 bp overlap
ZSCAN21 1 dataset
ChIP HEK293 ENCFF582WUP 119 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 115 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 175 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 71 bp overlap
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