chr2 : 172,131,690 172,132,350
660 bp 102 TFs 4 linked genes
This 660 bp open chromatin element is linked to 4 target genes and is bound by 102 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
METAP1D 132.0 kb Distal Multiome
HAT1 209.5 kb Distal Multiome
SLC25A12 237.7 kb Distal Multiome
ITGA6 295.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:172,126,690 – 172,137,350
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 352 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 660 bp overlap
ChIP H1 ENCFF399KAM 378 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 660 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 501 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 239 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 345 bp overlap
BRCA1 1 dataset
ChIP MCF-10A GSE40591.BRCA1.MCF-10A 209 bp overlap
BRD4 2 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 357 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 259 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 225 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 228 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 421 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 264 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 356 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 167 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 118 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 131 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 226 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 493 bp overlap
ESR1 1 dataset
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 237 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 321 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 438 bp overlap
ChIP DE DE-FOXA2-2 383 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 2 datasets
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 337 bp overlap
ChIP WTC11 ENCFF338WGC 345 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 350 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-2 481 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 537 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 395 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 562 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 511 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 265 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 425 bp overlap
ChIP H1 ENCFF353UJQ 628 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
HLF 1 dataset
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 295 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 571 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 404 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 457 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 454 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 324 bp overlap
LIN54 2 datasets
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 214 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 163 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 297 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 660 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 629 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 168 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 620 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 515 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 537 bp overlap
ChIP hESC GSE20650.NANOG.hESC 285 bp overlap
ChIP hESC GSE18292.NANOG.hESC 335 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 302 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 332 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 239 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 253 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 255 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 241 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 376 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 660 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 391 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 660 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 307 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 380 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 231 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 396 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 652 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 391 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 300 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 307 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 302 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 424 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 292 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 440 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 189 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 354 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 324 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 134 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 144 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 255 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 456 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 356 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 476 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 461 bp overlap
SMARCC1 3 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 286 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 403 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 610 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 289 bp overlap
ChIP hESC GSE18292.SOX2.hESC 107 bp overlap
ChIP hESC GSE18292.SOX2.hESC 106 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 512 bp overlap
SOX21 2 datasets
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 437 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 195 bp overlap
SP4 1 dataset
ChIP H1 ENCFF473YOB 398 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 443 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 389 bp overlap
TRIM28 3 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 303 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 251 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 286 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZFX 2 datasets
ChIP HCT-116 ENCSR503GVO.ZFX.HCT-116 134 bp overlap
ChIP HCT-116 GSE102616.ZFX.HCT-116 134 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 660 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap