chr2 : 104,790,139 104,790,648
509 bp 88 TFs 0 linked genes
This 509 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:104,785,139 – 104,795,648
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 17 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 73 bp overlap
ChIP LNCaP_D226N_shFOXA1_Ethanol GSE128883.AR.LNCaP_D226N_shFOXA1_Ethanol 62 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 135 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 126 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 129 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 140 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 170 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 168 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 179 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 318 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 90 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 113 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 145 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 174 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 269 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 181 bp overlap
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 272 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 309 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 343 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 252 bp overlap
BRD4 5 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 96 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 379 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 192 bp overlap
ChIP hESC GSE33281.BRD4.hESC 94 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 452 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 450 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 417 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 177 bp overlap
E2F6 3 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 425 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 280 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 298 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 417 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 309 bp overlap
ESR1 7 datasets
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 224 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 418 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 406 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 317 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 387 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 225 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 292 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 227 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 130 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 229 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 266 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 183 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 268 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 369 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 119 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 237 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 265 bp overlap
NFIB 4 datasets
ChIP MCF-7 ENCFF799WGQ 325 bp overlap
ChIP MCF-7 ENCFF925CGH 94 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 291 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 250 bp overlap
NFIC 4 datasets
ChIP Ishikawa ENCFF029AAD 343 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 447 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 396 bp overlap
ChIP K562 ENCFF167YID 244 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NR3C1 8 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 157 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 128 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 434 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 52 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 230 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 206 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 255 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 252 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX1 1 dataset
Motif DE_12h DE_12h-PAX1_MA0779.2 16 bp overlap
PAX2 1 dataset
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 191 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 335 bp overlap
PAX8 1 dataset
Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap
PAX9 1 dataset
Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 227 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 129 bp overlap
POLR2A 1 dataset
ChIP breast epithelium ENCFF960NNA 371 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 234 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 269 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 159 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 236 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 392 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 269 bp overlap
REST 2 datasets
ChIP PFSK-1 ENCFF845VHA 170 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 295 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 279 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 272 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 444 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 194 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 479 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 257 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 312 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 307 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 485 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 509 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 303 bp overlap
SOX2 7 datasets
ChIP HNSC GSE69479.SOX2.HNSC 454 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 273 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 128 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 335 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 265 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 275 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 275 bp overlap
SRF 2 datasets
ChIP Ishikawa ENCFF992QXM 305 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 219 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 471 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 315 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 116 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 285 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 416 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ChIP WTC11 ENCFF352POG 375 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 196 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 88 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap