chr2 : 65,750,849 – 65,751,661
812 bp 95 TFs 0 linked genes
This 812 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:65,745,849 – 65,756,661
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 137 bp overlap
ASCL1 2 datasets
Motif DE_72h DE_72h-ASCL1_MA1100.3 8 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
Ahr::Arnt 1 dataset
Motif DE_72h DE_72h-AhrArnt_MA0006.2 5 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 1 dataset
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 219 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 127 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 228 bp overlap
ChIP BLaER1 ENCFF262VBH 251 bp overlap
ChIP BLaER1 ENCFF262VBH 146 bp overlap
ChIP BLaER1 ENCFF335XTP 50 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 259 bp overlap
EBF1 1 dataset
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 310 bp overlap
ChIP hESC GSE26097.EOMES.hESC 297 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 239 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 124 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 174 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 326 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 302 bp overlap
Ebf2 1 dataset
Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
Elf5 1 dataset
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
FEZF2 2 datasets
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 812 bp overlap
ChIP DE DE-FOXA2-2 812 bp overlap
GATA1 2 datasets
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 129 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 232 bp overlap
ChIP SK-N-SH ENCFF764OZD 253 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 292 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 267 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 106 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 180 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 192 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 147 bp overlap
ChIP SH-SY5Y ENCFF475HYF 249 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 172 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 812 bp overlap
ChIP DE DE-GATA4-2 812 bp overlap
ChIP foregut GSE117136.GATA4.foregut 759 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 812 bp overlap
ChIP DE DE-GATA6-2 812 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 692 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 755 bp overlap
ChIP foregut GSE117136.GATA6.foregut 698 bp overlap
Gfi1B 2 datasets
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 198 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 150 bp overlap
HIC2 1 dataset
Motif DE_72h DE_72h-HIC2_MA0738.2 6 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 69 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 176 bp overlap
KLF3 1 dataset
Motif DE_72h DE_72h-KLF3_MA1516.2 10 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 295 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 110 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 316 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 274 bp overlap
NFATC3 2 datasets
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NKX2-2 2 datasets
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 4 datasets
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR5A1 2 datasets
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
Neurod2 1 dataset
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nfat5 2 datasets
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr2e3 2 datasets
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_72h DE_72h-Nr2e3_MA0164.2 6 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 179 bp overlap
PAX6 2 datasets
Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap
Motif DE_72h DE_72h-PAX6_MA0069.1 14 bp overlap
PGR 3 datasets
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 281 bp overlap
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 93 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 136 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 276 bp overlap
PLAG1 2 datasets
Motif DE_60h DE_60h-PLAG1_MA0163.1 14 bp overlap
Motif DE_72h DE_72h-PLAG1_MA0163.1 14 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 2 datasets
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_72h DE_72h-PpargRxra_MA0065.3 13 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCFF747MAS 199 bp overlap
RARB 1 dataset
Motif DE_72h DE_72h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_72h DE_72h-RARG_MA1553.2 13 bp overlap
RBPJ 1 dataset
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 225 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 179 bp overlap
RELA 2 datasets
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
Motif DE_72h DE_72h-RELA_MA0107.1 10 bp overlap
RFX4 1 dataset
Motif DE_72h DE_72h-RFX4_MA0799.3 13 bp overlap
RORA 2 datasets
Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap
Motif DE_72h DE_72h-RORA_MA0071.1 10 bp overlap
RXRB 1 dataset
Motif DE_72h DE_72h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_72h DE_72h-RXRG_MA1556.1 14 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 776 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 594 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 179 bp overlap
TEAD1 2 datasets
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD2 2 datasets
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TFAP2A 2 datasets
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 253 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 211 bp overlap
THAP1 1 dataset
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
THRB 2 datasets
Motif DE_60h DE_60h-THRB_MA1574.2 13 bp overlap
Motif DE_72h DE_72h-THRB_MA1574.2 13 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 84 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 180 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZKSCAN5 2 datasets
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF317 3 datasets
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF35 2 datasets
Motif DE_60h DE_60h-ZNF35_MA2333.1 7 bp overlap
Motif DE_72h DE_72h-ZNF35_MA2333.1 7 bp overlap
ZNF454 2 datasets
Motif DE_60h DE_60h-ZNF454_MA1712.2 17 bp overlap
Motif DE_72h DE_72h-ZNF454_MA1712.2 17 bp overlap
ZNF460 2 datasets
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF528 1 dataset
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
ZNF530 2 datasets
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF682 2 datasets
Motif DE_60h DE_60h-ZNF682_MA1599.2 11 bp overlap
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
ZNF75A 2 datasets
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
ZNF770 2 datasets
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
ZNF85 2 datasets
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
ZSCAN21 2 datasets
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_72h DE_72h-ZSCAN21_MA2336.1 7 bp overlap
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