chr2 : 54,551,146 54,551,541
395 bp 75 TFs 1 linked gene
This 395 bp open chromatin element is linked to SPTBN1 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SPTBN1 6.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:54,546,146 – 54,556,541
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 77 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 395 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 170 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 201 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 180 bp overlap
BRD3 1 dataset
ChIP MM1-S GSE43743.BRD3.MM1-S 214 bp overlap
BRD4 11 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 395 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 395 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 395 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 391 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 292 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 378 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 306 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 351 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 395 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 315 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 395 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 167 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK9 6 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 362 bp overlap
ChIP MM1-S_DMSO GSE42355.CDK9.MM1-S_DMSO 205 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 221 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 203 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 137 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 310 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 110 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 52 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 161 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 140 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 76 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 118 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 87 bp overlap
FOXA1 5 datasets
ChIP LS180 GSE140533.FOXA1.LS180 112 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 226 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 282 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 101 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 237 bp overlap
FOXA2 1 dataset
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 129 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 97 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 217 bp overlap
ChIP DE DE-GATA4-2 227 bp overlap
ChIP foregut GSE117136.GATA4.foregut 270 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 224 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 299 bp overlap
GATA6 6 datasets
ChIP PATU8988 GSE47535.GATA6.PATU8988 270 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 185 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 234 bp overlap
ChIP foregut GSE117136.GATA6.foregut 303 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 262 bp overlap
GRHL2 2 datasets
ChIP HBE GSE46194.GRHL2.HBE 81 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 92 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 286 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 249 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 140 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 58 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 163 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 158 bp overlap
KDM5B 1 dataset
ChIP WA01 ENCSR000AUR.KDM5B.WA01 237 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 197 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 172 bp overlap
MAX 2 datasets
ChIP P493-6 GSE42262.MAX.P493-6 193 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 172 bp overlap
MED1 5 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 264 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 292 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 387 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 395 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 346 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 236 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 276 bp overlap
MYC 2 datasets
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 180 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 193 bp overlap
MYOD1 4 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 288 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 200 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 231 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 174 bp overlap
NANOG 1 dataset
ChIP WA01 ERP004238.NANOG.WA01 303 bp overlap
PGR 1 dataset
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 72 bp overlap
POLR2A 1 dataset
ChIP body of pancreas ENCFF727UBE 188 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 153 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 170 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 333 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 238 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 293 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 149 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 107 bp overlap
SNAI2 2 datasets
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 229 bp overlap
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 395 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 367 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 154 bp overlap
SPI1 4 datasets
ChIP GM12891 ENCFF563IUT 231 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 142 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 327 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 220 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 395 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 295 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 139 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 243 bp overlap
ChIP hESC GSE122298.TBP.hESC 189 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 124 bp overlap
TCF12 4 datasets
ChIP GM12878 ENCFF506WWB 236 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 215 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 275 bp overlap
TCF3 4 datasets
ChIP GM12878 ENCFF658WIO 240 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 159 bp overlap
ChIP NPC GSE154479.TCF3.NPC 286 bp overlap
ChIP Ramos GSE139810.TCF3.Ramos 296 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 241 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 170 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 189 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 284 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 225 bp overlap
TFAP4 2 datasets
ChIP DLD-1 GSE46935.TFAP4.DLD-1 395 bp overlap
ChIP HepG2 ENCFF932XOY 378 bp overlap
TP63 1 dataset
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 279 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 240 bp overlap
USF2 1 dataset
ChIP GM12878 GSE97661.USF2.GM12878 173 bp overlap
YY1 6 datasets
ChIP GM12878 ENCFF908JTL 250 bp overlap
ChIP GM12891 ENCFF460SIS 245 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 161 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 163 bp overlap
ChIP H1 ENCFF524BTL 280 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 302 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 335 bp overlap
ZC3H13 1 dataset
ChIP HepG2 ENCFF444JZJ 377 bp overlap
ZNF331 1 dataset
ChIP GM23338 ENCFF410NSZ 225 bp overlap
ZNF341 1 dataset
ChIP HIES_EBV-B_ZNF341_isoform2 GSE113194.ZNF341.HIES_EBV-B_ZNF341_isoform2 206 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap