chrX : 137,563,909 – 137,564,656
747 bp 82 TFs 3 linked genes
This 747 bp open chromatin element is linked to LINC02931, ZIC3, and ENSG00000283692 and is bound by 82 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02931 at TSS At TSS Proximity
ZIC3 1.5 kb Proximal Proximity
ENSG00000283692 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:137,558,909 – 137,569,656
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 273 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 678 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 187 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 371 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 242 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 112 bp overlap
BCL6 1 dataset
Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 731 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 348 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 743 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 217 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 415 bp overlap
BRD4 3 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 747 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 276 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 149 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 324 bp overlap
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 313 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 219 bp overlap
CTCF 2 datasets
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 524 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF2 2 datasets
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELF4 2 datasets
Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap
Motif ES_0h ES_0h-ELF4_MA0641.1 12 bp overlap
ELK4 2 datasets
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 323 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 155 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 114 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif ES_0h ES_0h-ETV5FOXI1_MA1946.2 12 bp overlap
ETV6 2 datasets
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
Motif ES_0h ES_0h-ETV6_MA0645.2 9 bp overlap
ETV7 2 datasets
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
EZH2 11 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 64 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 112 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 187 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 415 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 200 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 379 bp overlap
ChIP neural progenitor cell ENCFF018MKA 67 bp overlap
ChIP neural progenitor cell ENCFF472NFV 583 bp overlap
ChIP neural progenitor cell ENCFF472NFV 187 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 58 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 482 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 403 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 57 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 138 bp overlap
Hoxd13 1 dataset
Motif ES_0h ES_0h-Hoxd13_MA0909.4 7 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 414 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 458 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 676 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 475 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 747 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 471 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 104 bp overlap
NANOG 5 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 177 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 386 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 299 bp overlap
ChIP hESC GSE18292.NANOG.hESC 250 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 98 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 176 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP H1 ENCFF566JSR 207 bp overlap
ChIP H1 ENCFF833NJP 408 bp overlap
POU5F1 8 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 747 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 747 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 480 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 747 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 89 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 719 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 212 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 203 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 539 bp overlap
PPARD 1 dataset
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 58 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 264 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 522 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 164 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 402 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 489 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 118 bp overlap
SAP30 3 datasets
ChIP H1 ENCFF149IOE 352 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 152 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 367 bp overlap
SIN3A 4 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 129 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 143 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 285 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 412 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 300 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 164 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 642 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 581 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 475 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 351 bp overlap
SMARCC1 3 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 423 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 643 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 543 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 523 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 104 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 401 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 171 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 107 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 63 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 192 bp overlap
STAT1::STAT2 3 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_24h DE_24h-STAT1STAT2_MA0517.2 13 bp overlap
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 163 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 61 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 484 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 185 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 230 bp overlap
TBP 6 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 151 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 393 bp overlap
ChIP hESC GSE122298.TBP.hESC 497 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 241 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 577 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 141 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 174 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 479 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 126 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 193 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 145 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 249 bp overlap
Vdr 1 dataset
Motif ES_0h ES_0h-Vdr_MA0693.4 7 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 168 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 235 bp overlap
ZBTB11 2 datasets
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
Motif ES_0h ES_0h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 172 bp overlap
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 203 bp overlap
ZNF611 1 dataset
ChIP HEK293T GSE78099.ZNF611.HEK293T 372 bp overlap
ZSCAN16 1 dataset
Motif ES_0h ES_0h-ZSCAN16_MA2100.1 18 bp overlap
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