chrX : 72,115,329 72,115,816
487 bp 75 TFs 4 linked genes
This 487 bp open chromatin element is linked to 4 target genes and is bound by 75 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
PIN4 66.1 kb Distal Multiome
ERCC6L 123.4 kb Distal Multiome
RPS4X 161.7 kb Distal Multiome
NHSL2 204.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:72,110,329 – 72,120,816
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 198 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 337 bp overlap
Arid3b 2 datasets
Motif DE_48h DE_48h-Arid3b_MA0601.2 7 bp overlap
Motif DE_72h DE_72h-Arid3b_MA0601.2 7 bp overlap
BRD4 5 datasets
ChIP BE2C GSE80151.BRD4.BE2C 487 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 487 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 350 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 487 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 311 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 350 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 229 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 442 bp overlap
CRX 1 dataset
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 201 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 352 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 314 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 487 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 139 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 174 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 201 bp overlap
FLI1 1 dataset
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 222 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 431 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 238 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 379 bp overlap
ChIP SK-N-SH ENCFF764OZD 111 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 321 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 280 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 422 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 333 bp overlap
ChIP NGP GSE65664.GATA3.NGP 165 bp overlap
ChIP SH-SY5Y ENCFF475HYF 453 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 200 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 283 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 329 bp overlap
ChIP DE DE-GATA4-2 372 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 255 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 396 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 373 bp overlap
ChIP DE DE-GATA6-2 350 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 374 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 389 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 417 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 392 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 466 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 449 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 361 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 264 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 268 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 174 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 383 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 300 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 487 bp overlap
HLF 1 dataset
Motif DE_36h DE_36h-HLF_MA0043.4 9 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 487 bp overlap
ChIP SK-N-SH ENCFF285GEQ 295 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 327 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 152 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 286 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 173 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 359 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 376 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 374 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 322 bp overlap
MEIS1 2 datasets
ChIP A-673 GSE109477.MEIS1.A-673 207 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 355 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 339 bp overlap
MYB 1 dataset
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 450 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 321 bp overlap
MYCN 13 datasets
ChIP BE2C GSE80151.MYCN.BE2C 364 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 199 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 353 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 487 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 140 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 206 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 427 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 349 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 403 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 354 bp overlap
ChIP NGP GSE80151.MYCN.NGP 219 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 355 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 268 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 306 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 209 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 487 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 437 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 130 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 347 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 209 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PDX1 3 datasets
ChIP hESC GSE58685.PDX1.hESC 273 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 355 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 245 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 443 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 357 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 365 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 172 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 273 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 391 bp overlap
POU2F2 1 dataset
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 334 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 313 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 420 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 166 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 384 bp overlap
REST 2 datasets
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 145 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 124 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 190 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 241 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 187 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 379 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 272 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 330 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 361 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 365 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 457 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 155 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 198 bp overlap
SMARCA4 6 datasets
ChIP NGP GSE134626.SMARCA4.NGP 52 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 350 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 407 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 341 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 271 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 262 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 159 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 211 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 445 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 241 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 364 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 396 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 376 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 248 bp overlap
ChIP SK-N-SH ENCFF270OWF 409 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 468 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 487 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 487 bp overlap
ChIP SK-N-SH ENCFF754TJT 401 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 222 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 314 bp overlap
THAP1 1 dataset
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 370 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 347 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 480 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 480 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 219 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 374 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 389 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 136 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 265 bp overlap