chrX : 69,164,511 69,164,721
210 bp 83 TFs 1 linked gene
This 210 bp open chromatin element is linked to PJA1 and is bound by 83 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PJA1 731 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:69,159,511 – 69,169,721
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP macrophage GSE80727.ATF2.macrophage 210 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 210 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 142 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 143 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 160 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 120 bp overlap
BRCA1 2 datasets
ChIP TC-32 GSE87324.BRCA1.TC-32 210 bp overlap
ChIP U2OS GSE87324.BRCA1.U2OS 210 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 63 bp overlap
BRD3 1 dataset
ChIP LPS141 GSE111253.BRD3.LPS141 210 bp overlap
BRD4 1 dataset
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 190 bp overlap
CHD2 1 dataset
ChIP GM12878 ENCFF697XCL 210 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 175 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 210 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 164 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000EWJ.E2F6.K-562 135 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 139 bp overlap
EGR1 1 dataset
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 200 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 210 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 171 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 162 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 120 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 120 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 208 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 185 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 153 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 131 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 202 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 81 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 120 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 177 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 210 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 180 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 142 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 210 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 209 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 168 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 171 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 210 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 120 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 167 bp overlap
KLF9 3 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 199 bp overlap
ChIP HEK293 ENCFF588INF 210 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 210 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 210 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 141 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 210 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 134 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 153 bp overlap
MAZ 6 datasets
ChIP GM12878 ENCFF404CEP 210 bp overlap
ChIP GM12878 ENCSR000DZA.MAZ.GM12878 117 bp overlap
ChIP HEK293 ENCFF994GSG 210 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 210 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 210 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 209 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR512NLO.MNT.K-562 91 bp overlap
MXI1 5 datasets
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 67 bp overlap
ChIP SK-N-SH ENCFF746HVJ 139 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 102 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 117 bp overlap
ChIP neural cell ENCFF623HQN 130 bp overlap
MYC 3 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 66 bp overlap
ChIP U2OS_Doxy GSE44672.MYC.U2OS_Doxy 82 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 86 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 155 bp overlap
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 87 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 207 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 123 bp overlap
NCOR1 2 datasets
ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 210 bp overlap
ChIP HEK293T_SIGSP2 GSE35197.NCOR1.HEK293T_SIGSP2 210 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 104 bp overlap
NRF1 20 datasets
ChIP GM12878 ENCFF969FRH 204 bp overlap
ChIP GM12878 ENCSR000DZO.NRF1.GM12878 139 bp overlap
ChIP H1 ENCFF582PEJ 210 bp overlap
ChIP HCC1954 GSE67867.NRF1.HCC1954 193 bp overlap
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 210 bp overlap
ChIP HeLa_dC9Sun-D3A_TMEM206 GSE107607.NRF1.HeLa_dC9Sun-D3A_TMEM206 113 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 210 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 210 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 210 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 210 bp overlap
ChIP K-562_Ab_R157-1-3H1 GSE97661.NRF1.K-562_Ab_R157-1-3H1 156 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 210 bp overlap
ChIP K562 ENCFF130SGK 210 bp overlap
ChIP K562 ENCFF689EWI 210 bp overlap
ChIP K562 ENCFF791UHF 210 bp overlap
ChIP MCF-7_Ab_R157-1-3D4 GSE97661.NRF1.MCF-7_Ab_R157-1-3D4 210 bp overlap
ChIP Namalwa GSE53133.NRF1.Namalwa 210 bp overlap
ChIP SK-N-SH ENCFF820YTU 210 bp overlap
ChIP SK-N-SH ENCSR000EHZ.NRF1.SK-N-SH 210 bp overlap
ChIP WA01 ENCSR000ECC.NRF1.WA01 189 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 139 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 210 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 171 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 210 bp overlap
POLR2A 2 datasets
ChIP Raji ENCFF613VGX 210 bp overlap
ChIP neural cell ENCFF604SPB 210 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 53 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 210 bp overlap
RBFOX2 1 dataset
ChIP K-562 GSE120104.RBFOX2.K-562 128 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 75 bp overlap
REST 1 dataset
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 210 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 72 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 53 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 138 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 88 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 210 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 210 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 209 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 183 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 139 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 196 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 187 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 99 bp overlap
SRF 2 datasets
ChIP GM12878 ENCFF878IIX 142 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 77 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 189 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 210 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 73 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 167 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 210 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 191 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 86 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 210 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 185 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 168 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 130 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 210 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 210 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 210 bp overlap
ZNF639 2 datasets
ChIP K-562 ENCSR949NVY.ZNF639.K-562 210 bp overlap
ChIP K562 ENCFF267NLX 210 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 60 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 210 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 181 bp overlap