chr20 : 49,997,468 49,998,291
823 bp 80 TFs 5 linked genes
This 823 bp open chromatin element is linked to 5 target genes and is bound by 80 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
RNF114 61.3 kb Distal Multiome
UBE2V1 115.4 kb Distal Multiome
PEDS1 156.0 kb Distal Multiome
SLC9A8 184.8 kb Distal Multiome
B4GALT5 283.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:49,992,468 – 50,003,291
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 191 bp overlap
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 152 bp overlap
AR 2 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 224 bp overlap
ARID1A 1 dataset
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 75 bp overlap
ARRB1 1 dataset
ChIP LNCaP-C4-2 GSE55615.ARRB1.LNCaP-C4-2 144 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 205 bp overlap
BRD4 5 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 283 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 63 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 211 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 194 bp overlap
ChIP VCaP_R1881 GSE148358.BRD4.VCaP_R1881 274 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 357 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 279 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 106 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 192 bp overlap
ESR1 28 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 474 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 278 bp overlap
ChIP MCF-7_E2 GSE73956.ESR1.MCF-7_E2 341 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 227 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 183 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 173 bp overlap
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 173 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 211 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 484 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 186 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 359 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 172 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 326 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 411 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 268 bp overlap
ChIP MCF-7_estradiol_45min_H4 GSE99626.ESR1.MCF-7_estradiol_45min_H4 230 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 361 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 321 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 197 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 230 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 323 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 325 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 224 bp overlap
ChIP T-47D ENCSR000BJS.ESR1.T-47D 123 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 323 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 337 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 330 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 418 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 227 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 137 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 82 bp overlap
EZH2 1 dataset
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 233 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 2 datasets
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 196 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 255 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 520 bp overlap
ChIP DE DE-FOXA2-2 477 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 481 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 317 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 134 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 148 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 207 bp overlap
GATA2 3 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 235 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 197 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 257 bp overlap
GATA3 5 datasets
ChIP MCF-7 ENCFF352QVM 447 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 263 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 256 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 303 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 307 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 419 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 204 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 509 bp overlap
ChIP DE DE-GATA4-2 596 bp overlap
ChIP foregut GSE117136.GATA4.foregut 413 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 372 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 474 bp overlap
GATA6 10 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 232 bp overlap
ChIP DE DE-GATA6-1 474 bp overlap
ChIP DE DE-GATA6-2 528 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 226 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 511 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 356 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 192 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 503 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 354 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 329 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 230 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 410 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 232 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 201 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 292 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 240 bp overlap
MED1 4 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 224 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 412 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 118 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 158 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-HUSH-KO GSE95451.MORC2.HeLa_V5-HUSH-KO 188 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 185 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCFF394LGD 305 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94782.MYCN.Kelly 144 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 144 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 123 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 193 bp overlap
ChIP HeLa GSE125534.NELFE.HeLa 130 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 216 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 216 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 66 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 317 bp overlap
NRL 1 dataset
ChIP HepG2 ENCFF528PUT 474 bp overlap
POLR2A 1 dataset
ChIP MCF-7 ENCFF411WCU 380 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RBM39 1 dataset
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 195 bp overlap
RELA 1 dataset
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 136 bp overlap
RUNX1 1 dataset
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 157 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 790 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 344 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 571 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 425 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 428 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 138 bp overlap
SMARCB1 4 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 208 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 370 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 233 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 286 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 797 bp overlap
SRF 1 dataset
ChIP MCF-7 ENCFF508RYE 345 bp overlap
STAT3 5 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 294 bp overlap
ChIP MCF-7_jc5843 GSE126004.STAT3.MCF-7_jc5843 244 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 469 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 196 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 665 bp overlap
SUZ12 2 datasets
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 57 bp overlap
ChIP MCF-7 ENCSR757EMK.SUZ12.MCF-7 70 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 145 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 149 bp overlap
TFAP2C 6 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 551 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 198 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 223 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 423 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 83 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 162 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 141 bp overlap
ZBTB5 1 dataset
ChIP K-562 ENCSR389PWB.ZBTB5.K-562 103 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF140 1 dataset
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF280B 1 dataset
ChIP HepG2 ENCFF084BYB 422 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 475 bp overlap