chr20 : 6,870,225 6,870,893
668 bp 112 TFs 0 linked genes
This 668 bp open chromatin element has no linked target genes and is bound by 112 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:6,865,225 – 6,875,893
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 164 bp overlap
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 210 bp overlap
ARNT 1 dataset
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 122 bp overlap
ATF2 1 dataset
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif DE_24h DE_24h-BARX2_MA1471.2 9 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_24h DE_24h-Bcl11B_MA1989.2 9 bp overlap
CDX2 1 dataset
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
CEBPA 1 dataset
Motif DE_24h DE_24h-CEBPA_MA0102.5 10 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 252 bp overlap
CEBPD 1 dataset
Motif DE_24h DE_24h-CEBPD_MA0836.3 8 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 491 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 328 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DMRTA2 1 dataset
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 314 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
E2F6 1 dataset
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 161 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 307 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 198 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 244 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 381 bp overlap
ChIP DE DE-FOXA2-2 328 bp overlap
GATA1 1 dataset
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 527 bp overlap
ChIP DE DE-GATA4-2 538 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 530 bp overlap
ChIP DE DE-GATA6-2 479 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 668 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 668 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 668 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 465 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 668 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 668 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GFI1 1 dataset
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 192 bp overlap
ChIP GM12878 ENCFF824TGK 446 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 468 bp overlap
ChIP GM12878 ENCFF918AID 443 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 253 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 220 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 668 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 668 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 668 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 202 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA1639.2 9 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 145 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 291 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 284 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 523 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 347 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 251 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 273 bp overlap
NR2C1 2 datasets
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR5A1 1 dataset
Motif DE_24h DE_24h-NR5A1_MA1540.3 12 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Nr1H2 2 datasets
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
PBX1 1 dataset
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 430 bp overlap
Prdm4 2 datasets
Motif DE_24h DE_24h-Prdm4_MA1647.3 11 bp overlap
Motif DE_24h DE_24h-Prdm4_MA1647.3 11 bp overlap
Prdm5 2 datasets
Motif DE_24h DE_24h-Prdm5_MA1999.2 11 bp overlap
Motif DE_24h DE_24h-Prdm5_MA1999.2 11 bp overlap
RARA 1 dataset
Motif DE_24h DE_24h-RARA_MA0729.1 18 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 403 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 489 bp overlap
RORA 1 dataset
Motif DE_24h DE_24h-RORA_MA0071.1 10 bp overlap
RORB 2 datasets
Motif DE_24h DE_24h-RORB_MA1150.2 10 bp overlap
Motif DE_24h DE_24h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_24h DE_24h-RORC_MA1151.2 10 bp overlap
Rfx6 1 dataset
Motif DE_24h DE_24h-Rfx6_MA1724.2 9 bp overlap
SATB1 1 dataset
Motif DE_24h DE_24h-SATB1_MA1963.2 7 bp overlap
SIX1 2 datasets
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
SIX2 4 datasets
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 243 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 214 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 297 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 668 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 668 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 668 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 668 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 668 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 647 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 285 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 110 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 285 bp overlap
SOX21 1 dataset
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
SREBF1 1 dataset
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
Six4 1 dataset
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Sox1 1 dataset
Motif DE_24h DE_24h-Sox1_MA0870.1 15 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 216 bp overlap
TBX19 1 dataset
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 283 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 242 bp overlap
TBXT 1 dataset
Motif DE_24h DE_24h-TBXT_MA0009.2 16 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
THRB 2 datasets
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP H9 GSE142050.TP53.H9 240 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZNF211 2 datasets
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
Motif DE_24h DE_24h-ZNF211_MA1974.2 10 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 104 bp overlap
ZNF324 1 dataset
Motif DE_24h DE_24h-ZNF324_MA1977.2 14 bp overlap
ZNF354A 1 dataset
Motif DE_24h DE_24h-ZNF354A_MA1978.2 20 bp overlap
ZNF416 1 dataset
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap