chr19 : 18,684,473 – 18,684,917

444 bp 70 TFs 1 linked gene

This 444 bp open chromatin element is linked to CRTC1 and is bound by 70 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CRTC1		796 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

70 transcription factors

AR 4 datasets

ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 172 bp overlap

ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 239 bp overlap

ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 226 bp overlap

ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 256 bp overlap

BAZ2A 1 dataset

ChIP HepG2 ENCFF797RVO 92 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 240 bp overlap

BRD2 2 datasets

ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 171 bp overlap

ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 291 bp overlap

BRD3 1 dataset

ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 155 bp overlap

BRD4 3 datasets

ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 77 bp overlap

ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 60 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 236 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 250 bp overlap

CDK9 1 dataset

ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap

CDKN1B 1 dataset

ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 444 bp overlap

CHD1 1 dataset

ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 82 bp overlap

CREB1 1 dataset

ChIP H1 ENCFF955PMP 116 bp overlap

CTBP1 1 dataset

ChIP K-562 ENCSR201NQZ.CTBP1.K-562 110 bp overlap

CTCF 2 datasets

ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap

ChIP erythroid GSE67783.CTCF.erythroid 222 bp overlap

ESR1 4 datasets

ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 211 bp overlap

ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 191 bp overlap

ChIP breast_tumor_Male_16 GSE104399.ESR1.breast_tumor_Male_16 95 bp overlap

ChIP breast_tumor_Male_16 GSE104399.ESR1.breast_tumor_Male_16 294 bp overlap

ETS1 2 datasets

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 217 bp overlap

ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 120 bp overlap

FLI1 1 dataset

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 282 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 184 bp overlap

GLIS2 2 datasets

ChIP HCT-116_DMSO GSE125927.GLIS2.HCT-116_DMSO 114 bp overlap

ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 105 bp overlap

GRHL2 1 dataset

ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 225 bp overlap

HDAC2 1 dataset

ChIP K-562 ENCSR893WSB.HDAC2.K-562 149 bp overlap

HDGF 1 dataset

ChIP K-562 ENCSR197ALX.HDGF.K-562 341 bp overlap

HIF1A 1 dataset

ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 335 bp overlap

ID3 1 dataset

ChIP K-562 ENCSR005NMT.ID3.K-562 198 bp overlap

INO80 1 dataset

ChIP Huh-7 GSE97411.INO80.Huh-7 77 bp overlap

IRF2BP2 1 dataset

ChIP HEK293 GSE124636.IRF2BP2.HEK293 168 bp overlap

KAT7 2 datasets

ChIP MOLM-13 GSE133516.KAT7.MOLM-13 220 bp overlap

ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 442 bp overlap

KDM5B 1 dataset

ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 194 bp overlap

KMT2A 1 dataset

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 218 bp overlap

MAX 1 dataset

ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 51 bp overlap

MED1 5 datasets

ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 332 bp overlap

ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 309 bp overlap

ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 271 bp overlap

ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 206 bp overlap

ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 112 bp overlap

MNX1 2 datasets

ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 174 bp overlap

ChIP HepG2 ENCFF938KYA 357 bp overlap

MTA1 1 dataset

ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 186 bp overlap

MXI1 1 dataset

ChIP neural ENCSR934NHU.MXI1.neural 97 bp overlap

MYCN 1 dataset

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 274 bp overlap

NELFE 2 datasets

ChIP K-562_HS GSE112379.NELFE.K-562_HS 98 bp overlap

ChIP K-562_HS GSE112379.NELFE.K-562_HS 187 bp overlap

NEUROG2 1 dataset

ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 221 bp overlap

NR3C1 1 dataset

ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 256 bp overlap

PATZ1 2 datasets

ChIP HEK293 ENCFF016MNJ 231 bp overlap

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 239 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 113 bp overlap

POLR2A 1 dataset

ChIP MCF-7 ENCFF411WCU 335 bp overlap

POU5F1 1 dataset

ChIP BG03 GSE21614.POU5F1.BG03 155 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 240 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 295 bp overlap

RBFOX2 4 datasets

ChIP K-562 GSE120104.RBFOX2.K-562 444 bp overlap

ChIP K-562 ENCSR822LBD.RBFOX2.K-562 358 bp overlap

ChIP K562 ENCFF196WTG 282 bp overlap

ChIP K562 ENCFF967GRF 252 bp overlap

RBM39 2 datasets

ChIP Hep-G2 GSE120104.RBM39.Hep-G2 248 bp overlap

ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 249 bp overlap

RUVBL2 1 dataset

ChIP Huh-7 GSE97411.RUVBL2.Huh-7 309 bp overlap

SIRT6 1 dataset

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 143 bp overlap

SMARCA4 1 dataset

ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 279 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 249 bp overlap

SNAI2 1 dataset

ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 192 bp overlap

SREBF2 1 dataset

ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 244 bp overlap

SS18 2 datasets

ChIP SYO-1 GSE108025.SS18.SYO-1 331 bp overlap

ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 200 bp overlap

TARDBP 2 datasets

ChIP K-562 GSE120104.TARDBP.K-562 199 bp overlap

ChIP K-562 ENCSR429XTR.TARDBP.K-562 303 bp overlap

TCF12 1 dataset

ChIP A-549 ENCSR000BQQ.TCF12.A-549 179 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 276 bp overlap

TP63 1 dataset

ChIP keratinocyte GSE33571.TP63.keratinocyte 191 bp overlap

TRIM25 1 dataset

ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 171 bp overlap

ZBTB2 1 dataset

ChIP K-562 ENCSR230PTV.ZBTB2.K-562 358 bp overlap

ZEB1 7 datasets

ChIP GM12878 ENCSR000BND.ZEB1.GM12878 79 bp overlap

ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 64 bp overlap

ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 69 bp overlap

ChIP MIA-PaCa-2 GSE88734.ZEB1.MIA-PaCa-2 428 bp overlap

ChIP MIA-PaCa-2_WT GSE88734.ZEB1.MIA-PaCa-2_WT 83 bp overlap

ChIP RKO GSE88734.ZEB1.RKO 444 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 62 bp overlap

ZEB2 4 datasets

ChIP K-562 ENCSR322CFO.ZEB2.K-562 231 bp overlap

ChIP K-562 ENCSR004GKA.ZEB2.K-562 163 bp overlap

ChIP K562 ENCFF795CMH 145 bp overlap

ChIP K562 ENCFF975RXS 111 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 444 bp overlap

ZNF276 1 dataset

ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 156 bp overlap

ZNF3 1 dataset

ChIP K-562 ENCSR195QFV.ZNF3.K-562 83 bp overlap

ZNF335 2 datasets

ChIP HEK293 ENCFF784SLD 297 bp overlap

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 289 bp overlap

ZNF407 1 dataset

ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 152 bp overlap

ZNF501 1 dataset

ChIP HepG2 ENCFF879XZR 235 bp overlap

ZNF550 1 dataset

ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 178 bp overlap

ZNF598 1 dataset

ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 248 bp overlap

ZNF790 1 dataset

ChIP HepG2 ENCFF743NFR 309 bp overlap

ZNF883 1 dataset

ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 183 bp overlap