chr16 : 30,085,944 30,086,599
655 bp 93 TFs 3 linked genes
This 655 bp open chromatin element is linked to TBX6, YPEL3, and PPP4C and is bound by 93 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
TBX6 5.3 kb Proximal Proximity
YPEL3 9.6 kb Proximal Proximity
PPP4C 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:30,080,944 – 30,091,599
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 458 bp overlap
AGO1 8 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 387 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 386 bp overlap
ChIP HepG2 ENCFF277EOU 383 bp overlap
ChIP HepG2 ENCFF358CXO 381 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 363 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 356 bp overlap
ChIP K562 ENCFF025NLP 207 bp overlap
ChIP K562 ENCFF741BCI 206 bp overlap
AGO2 4 datasets
ChIP HepG2 ENCFF252VFI 233 bp overlap
ChIP HepG2 ENCFF252VFI 538 bp overlap
ChIP HepG2 ENCFF773YDL 238 bp overlap
ChIP HepG2 ENCFF773YDL 542 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 138 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 284 bp overlap
ARID2 5 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 321 bp overlap
ChIP Aska-SS GSE108025.ARID2.Aska-SS 205 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 263 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 75 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 158 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 336 bp overlap
BRD4 5 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 59 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 146 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 459 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 365 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 427 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 202 bp overlap
DDX5 1 dataset
ChIP BT-549 GSE112961.DDX5.BT-549 180 bp overlap
DNMT3B 2 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 226 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 184 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 167 bp overlap
ESR1 1 dataset
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 550 bp overlap
ESR1_pS118 3 datasets
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 60 bp overlap
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 391 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 368 bp overlap
FIP1L1 3 datasets
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 231 bp overlap
ChIP K-562 ENCSR177DNR.FIP1L1.K-562 189 bp overlap
ChIP K-562 GSE120104.FIP1L1.K-562 186 bp overlap
FOS 2 datasets
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 69 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 273 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 346 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 353 bp overlap
GATA6 5 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 142 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 438 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 441 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 126 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 376 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 301 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 136 bp overlap
GLIS3 2 datasets
ChIP H9_plus GSE109562.GLIS3.H9_plus 252 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 221 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 231 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 199 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 302 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 421 bp overlap
HNRNPH1 5 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 104 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 495 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 493 bp overlap
ChIP HepG2 ENCFF024RBZ 421 bp overlap
ChIP HepG2 ENCFF024RBZ 258 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 283 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 347 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 307 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 310 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 310 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 655 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 655 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 103 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 114 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 356 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 85 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 654 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 98 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 133 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 64 bp overlap
KLF5 1 dataset
ChIP GM12878 ENCSR974OFJ.KLF5.GM12878 164 bp overlap
KMT2A 1 dataset
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 389 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 159 bp overlap
MCRS1 2 datasets
ChIP Hep-G2 GSE107730.MCRS1.Hep-G2 279 bp overlap
ChIP Hep-G2 GSE97411.MCRS1.Hep-G2 279 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 377 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 179 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCSR604WXQ.MSX2.MCF-7 328 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 260 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 259 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 189 bp overlap
NFKB1 3 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 148 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 99 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 122 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 376 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 299 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 320 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 351 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 425 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 172 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 123 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 446 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 252 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 113 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 551 bp overlap
POLR2A 15 datasets
ChIP GM12892 ENCFF542ZFO 443 bp overlap
ChIP GM12892 ENCFF542ZFO 209 bp overlap
ChIP GM19193 ENCFF599VTO 525 bp overlap
ChIP HL-60 ENCFF321XKE 232 bp overlap
ChIP HeLa-S3 ENCFF045HUU 217 bp overlap
ChIP HeLa-S3 ENCFF773DNG 251 bp overlap
ChIP HepG2 ENCFF718XAJ 421 bp overlap
ChIP HepG2 ENCFF718XAJ 324 bp overlap
ChIP HepG2 ENCFF718XAJ 108 bp overlap
ChIP K562 ENCFF137JSF 235 bp overlap
ChIP K562 ENCFF137JSF 491 bp overlap
ChIP K562 ENCFF262YXJ 191 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 214 bp overlap
ChIP spleen ENCFF706IUS 444 bp overlap
ChIP spleen ENCFF706IUS 444 bp overlap
POLR2G 4 datasets
ChIP HepG2 ENCFF241AEG 501 bp overlap
ChIP HepG2 ENCFF508UTS 213 bp overlap
ChIP K562 ENCFF047BLG 544 bp overlap
ChIP K562 ENCFF648YPL 545 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 158 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 647 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 206 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 302 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 655 bp overlap
PRPF4 1 dataset
ChIP K-562 ENCSR220YXI.PRPF4.K-562 197 bp overlap
PTBP1 3 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 123 bp overlap
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 270 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 86 bp overlap
RAD51 1 dataset
ChIP U2OS_CX-5461 GSE90967.RAD51.U2OS_CX-5461 125 bp overlap
RBFOX2 4 datasets
ChIP HepG2 ENCFF554DMZ 468 bp overlap
ChIP HepG2 ENCFF939HTZ 471 bp overlap
ChIP K562 ENCFF196WTG 513 bp overlap
ChIP K562 ENCFF967GRF 513 bp overlap
RBM22 7 datasets
ChIP HepG2 ENCFF292RVQ 143 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 101 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 459 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 451 bp overlap
ChIP K562 ENCFF420JDS 495 bp overlap
ChIP K562 ENCFF420JDS 287 bp overlap
ChIP K562 ENCFF629OUL 489 bp overlap
RBM39 6 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 128 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 126 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 460 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 398 bp overlap
ChIP HepG2 ENCFF084YZE 294 bp overlap
ChIP HepG2 ENCFF801JUH 292 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 260 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 410 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 289 bp overlap
RUVBL2 1 dataset
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 392 bp overlap
RXRA 1 dataset
ChIP GM12878 ENCSR000BJD.RXRA.GM12878 175 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 655 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 655 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 655 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 142 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 85 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 655 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 276 bp overlap
SMAD3 2 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 176 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 163 bp overlap
SMARCA4 2 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 100 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 234 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 298 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 442 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 483 bp overlap
SRSF4 3 datasets
ChIP Hep-G2 GSE120104.SRSF4.Hep-G2 338 bp overlap
ChIP Hep-G2 ENCSR696MBC.SRSF4.Hep-G2 299 bp overlap
ChIP HepG2 ENCFF593CLP 255 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 314 bp overlap
SUPT5H 11 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 367 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 463 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 138 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 153 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 67 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 257 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 211 bp overlap
ChIP K562 ENCFF902PAW 245 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 555 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 94 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 55 bp overlap
SUPT6H 2 datasets
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 655 bp overlap
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 373 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 176 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 297 bp overlap
TAF15 7 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 154 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 149 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 304 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 170 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 84 bp overlap
ChIP HepG2 ENCFF116QSW 245 bp overlap
ChIP HepG2 ENCFF406BOT 252 bp overlap
TARDBP 2 datasets
ChIP HepG2 ENCFF132LKJ 219 bp overlap
ChIP HepG2 ENCFF609NMG 222 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 76 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 317 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 186 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 272 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 178 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 602 bp overlap
ZBTB6 2 datasets
ChIP HEK293 GSE76494.ZBTB6.HEK293 278 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 338 bp overlap
ZC3H13 2 datasets
ChIP HepG2 ENCFF444JZJ 582 bp overlap
ChIP HepG2 ENCFF444JZJ 462 bp overlap
ZNF333 1 dataset
ChIP HepG2 ENCFF038JAL 170 bp overlap
ZNF407 2 datasets
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 160 bp overlap
ChIP HepG2 ENCFF537FDC 421 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 324 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 67 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 316 bp overlap