chr16 : 24,482,577 24,483,221
644 bp 74 TFs 2 linked genes
This 644 bp open chromatin element is linked to RBBP6 and TNRC6A and is bound by 74 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RBBP6 56.6 kb Distal Multiome
TNRC6A 246.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:24,477,577 – 24,488,221
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 644 bp overlap
ChIP H1 ENCFF399KAM 463 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 455 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 476 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 554 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BIP.BCL11A.WA01 168 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 197 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 388 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 185 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 314 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 498 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 266 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 338 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 208 bp overlap
DDX21 1 dataset
ChIP A-375 GSE128080.DDX21.A-375 151 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 250 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 138 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 403 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 249 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 180 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 490 bp overlap
ChIP Pfeiffer GSE45982.EZH2.Pfeiffer 83 bp overlap
ChIP neural progenitor cell ENCFF018MKA 516 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 561 bp overlap
ChIP DE DE-FOXA2-2 541 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 271 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 180 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 592 bp overlap
ChIP DE DE-GATA4-2 558 bp overlap
ChIP foregut GSE117136.GATA4.foregut 413 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 520 bp overlap
ChIP DE DE-GATA6-2 534 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 376 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 403 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 305 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 378 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 381 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
ChIP foregut GSE117136.GATA6.foregut 323 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 379 bp overlap
HCFC1 3 datasets
ChIP K-562 ENCSR000EFN.HCFC1.K-562 160 bp overlap
ChIP K562 ENCFF959WVM 211 bp overlap
ChIP MCF-7 ENCSR697CUP.HCFC1.MCF-7 193 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 235 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 191 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 130 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 570 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 326 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 406 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 306 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 466 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 429 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 538 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 203 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 172 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 169 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 165 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 149 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 291 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 313 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 204 bp overlap
NANOG 8 datasets
ChIP H1 ENCFF747ZPQ 224 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 527 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 351 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 194 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 624 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 313 bp overlap
ChIP hESC GSE20650.NANOG.hESC 463 bp overlap
ChIP hESC GSE18292.NANOG.hESC 344 bp overlap
NIPBL 3 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 360 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 365 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 238 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 310 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 239 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 204 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 519 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 449 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 644 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 245 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 140 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 484 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 355 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 218 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 354 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 603 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 564 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 223 bp overlap
ChIP H1 ENCFF967OJF 203 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 325 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 183 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 171 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 314 bp overlap
RXRA 2 datasets
ChIP H1 ENCFF570NHK 201 bp overlap
ChIP WA01 ENCSR000BJW.RXRA.WA01 219 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 336 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 336 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 109 bp overlap
SIX5 2 datasets
ChIP H1 ENCFF942SOJ 162 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 154 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 161 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 644 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 461 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 507 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 549 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 388 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 275 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 281 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 149 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 372 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 388 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 326 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 349 bp overlap
SMARCC1 3 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 168 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 235 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 264 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 305 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 437 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 331 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 545 bp overlap
ChIP hESC GSE69479.SOX2.hESC 327 bp overlap
ChIP hESC GSE18292.SOX2.hESC 111 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 523 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 491 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 280 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 299 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 318 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 302 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 286 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 239 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 259 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 394 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 346 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 174 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 355 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 199 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 101 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 213 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 289 bp overlap
ZNF143 15 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 161 bp overlap
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 206 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 209 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 191 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 240 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 157 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 119 bp overlap
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 267 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 250 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 246 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 333 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 271 bp overlap
ChIP WTC11 ENCFF249JUK 132 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 360 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 200 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 53 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 147 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 279 bp overlap