chr14 : 56,795,799 56,797,370
1,571 bp 78 TFs 1 linked gene
This 1.6 kb open chromatin element is linked to OTX2 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
OTX2 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:56,790,799 – 56,802,370
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ASCL1 4 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_24h DE_24h-ASCL1_MA1100.3 8 bp overlap
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 323 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 867 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 348 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 233 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 930 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 384 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 188 bp overlap
CTBP2 2 datasets
ChIP WA01 ENCSR000EUO.CTBP2.WA01 313 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCF 17 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H9 ENCFF152GTF 127 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 167 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 179 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 341 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 208 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 245 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 103 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 116 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 151 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 205 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 269 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP H1 ENCFF785DWK 54 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 229 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 222 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 290 bp overlap
ESR1 2 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 237 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 112 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 277 bp overlap
EZH2 15 datasets
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP H1 ENCFF232NZA 380 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 163 bp overlap
ChIP SK-N-SH ENCFF657FZK 431 bp overlap
ChIP SK-N-SH ENCFF657FZK 72 bp overlap
ChIP T98G GSE112240.EZH2.T98G 207 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 566 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 161 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 122 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 218 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 440 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 205 bp overlap
ChIP hepatocyte ENCFF552DZB 543 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP neural progenitor cell ENCFF472NFV 300 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOXA1 3 datasets
ChIP LNCaP GSE52725.FOXA1.LNCaP 165 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 150 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 296 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 539 bp overlap
ChIP DE DE-FOXA2-2 547 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 391 bp overlap
ChIP WTC11 ENCFF875IGU 198 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 344 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 141 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 453 bp overlap
ChIP DE DE-GATA4-2 582 bp overlap
ChIP foregut GSE117136.GATA4.foregut 279 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 354 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 328 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 354 bp overlap
ChIP DE DE-GATA6-2 607 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 522 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 70 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 590 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 632 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 509 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 112 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1171 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 139 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 675 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 417 bp overlap
ChIP foregut GSE117136.GATA6.foregut 402 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 340 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 120 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 194 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 234 bp overlap
JUN 12 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 663 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 452 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 569 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 861 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 483 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 761 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 306 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 800 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 923 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 494 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 707 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 291 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 145 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 106 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 79 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 161 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 486 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 273 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif DE_24h DE_24h-Msgn1_MA1524.3 10 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 186 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 286 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 450 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 450 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 487 bp overlap
ChIP hESC GSE18292.NANOG.hESC 119 bp overlap
ChIP hESC GSE20650.NANOG.hESC 154 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 60 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 271 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 98 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 244 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 334 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 256 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 196 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 235 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 120 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 744 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 351 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 51 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 257 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 226 bp overlap
REST 3 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 194 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 106 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 187 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 536 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 163 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 583 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 225 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 179 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 232 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 347 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 121 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 168 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 315 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 569 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 109 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 832 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 906 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 469 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 603 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 396 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 689 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 528 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 305 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 284 bp overlap
SMARCA4 4 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 236 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 521 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 512 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 195 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 462 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 377 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 111 bp overlap
SMARCC1 8 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 404 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 297 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 520 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 336 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 580 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 291 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 471 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 530 bp overlap
SNAI1 2 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI2 2 datasets
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
Motif DE_24h DE_24h-SNAI2_MA0745.3 8 bp overlap
SNAI3 2 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 195 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 482 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 241 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 470 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP4 2 datasets
ChIP WA01 ENCSR000BQV.SP4.WA01 231 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 148 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 123 bp overlap
SUZ12 4 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 362 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 73 bp overlap
ChIP H1 ENCFF881NFR 152 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 76 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 200 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 253 bp overlap
TCF12 4 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 366 bp overlap
TCF3 3 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 515 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 240 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 281 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 163 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 437 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 216 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 164 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 254 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 181 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 77 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap