chr13 : 106,530,651 106,531,078
427 bp 78 TFs 1 linked gene
This 427 bp open chromatin element is linked to EFNB2 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
EFNB2 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:106,525,651 – 106,536,078
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 62 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 66 bp overlap
ARID1A 4 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 161 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 139 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 305 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 210 bp overlap
ASH2L 2 datasets
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 150 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 400 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 168 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 223 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 181 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 106 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 167 bp overlap
BRD4 5 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 235 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 224 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 151 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 201 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 63 bp overlap
CREB1 10 datasets
ChIP GM23338 ENCFF432ZEW 118 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 191 bp overlap
ChIP H1 ENCFF955PMP 114 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 82 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 83 bp overlap
ChIP MCF-7 ENCFF341ZEM 241 bp overlap
ChIP MCF-7 ENCFF867SAS 250 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 188 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 214 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 216 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 179 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 85 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 97 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 200 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 351 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 171 bp overlap
ESR1 3 datasets
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 73 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 73 bp overlap
ChIP breast_tumor_Male_13 GSE104399.ESR1.breast_tumor_Male_13 427 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 90 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 59 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 57 bp overlap
FOS 4 datasets
ChIP MCF-7 ENCFF282FWZ 54 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 131 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 330 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 166 bp overlap
FOXA1 13 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 95 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 95 bp overlap
ChIP breast-cancer_ICI GSE101407.FOXA1.breast-cancer_ICI 219 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 189 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 183 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 427 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 109 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 400 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 152 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 113 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 427 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 150 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 141 bp overlap
GATA2 2 datasets
ChIP endothelial cell of umbilical vein ENCFF148NLK 98 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 298 bp overlap
GATA3 5 datasets
ChIP MCF-7 ENCFF695MAU 91 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 140 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 67 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 106 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 224 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 138 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 91 bp overlap
GRHL1 2 datasets
ChIP MCF-7 GSE140185.GRHL1.MCF-7 213 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.GRHL1.MCF-7_ARID1A-KO 81 bp overlap
GRHL2 5 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 89 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 134 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 194 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 148 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 81 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 404 bp overlap
HOXB13 4 datasets
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 50 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 94 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 89 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 125 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 135 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 309 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 252 bp overlap
JUN 4 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 170 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 70 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 118 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 384 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 63 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 203 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 182 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 101 bp overlap
KLF9 1 dataset
ChIP HEK293 ENCFF588INF 235 bp overlap
KMT2A 6 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 373 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 329 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 254 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 338 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 119 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 427 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 128 bp overlap
MEN1 1 dataset
ChIP MCF-7 GSE85317.MEN1.MCF-7 374 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCSR604WXQ.MSX2.MCF-7 192 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 127 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 139 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 103 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 290 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 173 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 93 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 427 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 67 bp overlap
POLR2A 14 datasets
ChIP endothelial cell of umbilical vein ENCFF091YHT 224 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 402 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 370 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 374 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 252 bp overlap
ChIP prostate gland ENCFF881OMH 284 bp overlap
ChIP sigmoid colon ENCFF748YVT 314 bp overlap
ChIP stomach ENCFF278MYS 221 bp overlap
ChIP stomach ENCFF607ZPU 227 bp overlap
ChIP thyroid gland ENCFF979LRR 357 bp overlap
ChIP transverse colon ENCFF610RWV 171 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 301 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 416 bp overlap
ChIP vagina ENCFF305NWS 263 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 99 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 108 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 169 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 179 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 57 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 176 bp overlap
ChIP neural ENCSR000BTV.REST.neural 69 bp overlap
ChIP neural cell ENCFF882LXX 385 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 72 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 193 bp overlap
SMARCA4 4 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 386 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 427 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 85 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 100 bp overlap
SMARCB1 5 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 149 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 80 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 129 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 137 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 109 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 383 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 248 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 393 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 158 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 101 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 214 bp overlap
TEAD4 1 dataset
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 75 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 206 bp overlap
YY1AP1 3 datasets
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 72 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 235 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 76 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 368 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 122 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 248 bp overlap
ChIP HEK293 ENCFF847JIE 427 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 384 bp overlap
ZFP37 3 datasets
ChIP HEK293 ENCFF968PWB 382 bp overlap
ChIP HEK293 ENCFF968PWB 337 bp overlap
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 268 bp overlap
ZNF121 3 datasets
ChIP HEK293 ENCFF839FUF 266 bp overlap
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 243 bp overlap
ChIP HEK293 GSE76494.ZNF121.HEK293 205 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 195 bp overlap
ZNF217 4 datasets
ChIP MCF-7 ENCFF299BWK 154 bp overlap
ChIP MCF-7 ENCFF379OSU 115 bp overlap
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 75 bp overlap
ChIP MCF-7 ENCSR000EWU.ZNF217.MCF-7 64 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 303 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 336 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 245 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 197 bp overlap