chr12 : 128,383,242 – 128,383,983
741 bp 113 TFs 0 linked genes
This 741 bp open chromatin element has no linked target genes and is bound by 113 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:128,378,242 – 128,388,983
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
113 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 170 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 174 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 379 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 458 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 338 bp overlap
BRD4 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 241 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 58 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 438 bp overlap
CTCF 3 datasets
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 216 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 338 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 375 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 62 bp overlap
EBF1 2 datasets
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EBF3 2 datasets
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 264 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 134 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 577 bp overlap
EZH2_phosphoT487 2 datasets
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 741 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 416 bp overlap
Ebf4 2 datasets
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 345 bp overlap
ChIP DE DE-FOXA2-2 466 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 278 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 690 bp overlap
ChIP DE DE-GATA4-2 741 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 481 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 699 bp overlap
ChIP DE DE-GATA6-2 708 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 715 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 741 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 585 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 703 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 741 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 708 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 691 bp overlap
ChIP foregut GSE117136.GATA6.foregut 404 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 463 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 262 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 179 bp overlap
HOXA3 1 dataset
Motif DE_72h DE_72h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_72h DE_72h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_72h DE_72h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_72h DE_72h-HOXC10_MA0905.2 9 bp overlap
HOXC4 1 dataset
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_72h DE_72h-HOXC9_MA0485.3 9 bp overlap
HOXD4 1 dataset
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
Hoxa11 1 dataset
Motif DE_72h DE_72h-Hoxa11_MA0911.2 9 bp overlap
IRF3 3 datasets
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
Irf1 3 datasets
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 379 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 280 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 492 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 497 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 505 bp overlap
KLF10 1 dataset
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF7 1 dataset
Motif DE_60h DE_60h-KLF7_MA1959.2 8 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 437 bp overlap
MEIS1 2 datasets
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_72h DE_72h-MEIS2_MA1640.2 9 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 118 bp overlap
ChIP HepG2 ENCFF701PYP 81 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 305 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 61 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 397 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 323 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 369 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 226 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 356 bp overlap
ChIP hESC GSE18292.NANOG.hESC 205 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 209 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 592 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NKX6-1 1 dataset
Motif DE_72h DE_72h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_72h DE_72h-NKX6-3_MA1530.2 8 bp overlap
NR1I3 1 dataset
Motif DE_60h DE_60h-NR1I3_MA1534.2 8 bp overlap
NR2C1 1 dataset
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
Nfat5 2 datasets
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nr1H2 1 dataset
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 348 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 280 bp overlap
RARA 3 datasets
Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 256 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 368 bp overlap
RARA::RXRA 1 dataset
Motif DE_72h DE_72h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 1 dataset
Motif DE_72h DE_72h-RARARXRG_MA1149.2 17 bp overlap
RBPJ 4 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REST 2 datasets
Motif DE_36h DE_36h-REST_MA0138.3 20 bp overlap
Motif DE_72h DE_72h-REST_MA0138.3 20 bp overlap
RORA 2 datasets
Motif DE_72h DE_72h-RORA_MA0071.1 10 bp overlap
Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap
RORB 1 dataset
Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_72h DE_72h-RORC_MA1151.2 10 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 238 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 558 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 487 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 607 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 622 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 446 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 385 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 489 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 526 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 145 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 188 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 270 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 313 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 369 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 209 bp overlap
SOX10 4 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 321 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 514 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 178 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 457 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 437 bp overlap
SP1 2 datasets
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 156 bp overlap
SP2 1 dataset
Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP9 2 datasets
Motif DE_60h DE_60h-SP9_MA1564.2 10 bp overlap
Motif DE_72h DE_72h-SP9_MA1564.2 10 bp overlap
SPIC 3 datasets
Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
STAT1::STAT2 3 datasets
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 615 bp overlap
Spi1 3 datasets
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Stat2 3 datasets
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 203 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 273 bp overlap
TCF7L1 1 dataset
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TFAP2A 2 datasets
Motif DE_60h DE_60h-TFAP2A_MA0872.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 2 datasets
Motif DE_60h DE_60h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 4 datasets
Motif DE_60h DE_60h-TFAP2C_MA0815.1 13 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 612 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 267 bp overlap
THAP1 1 dataset
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 222 bp overlap
ZBTB26 2 datasets
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZBTB6 2 datasets
Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZIM3 3 datasets
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF143 2 datasets
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ZNF148 3 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF24 2 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
ZNF281 5 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF707 3 datasets
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 83 bp overlap
Zfp809 2 datasets
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
Znf423 2 datasets
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap
Motif DE_72h DE_72h-Znf423_MA0116.1 15 bp overlap
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