chr12 : 115,163,558 115,164,209
651 bp 98 TFs 2 linked genes
This 651 bp open chromatin element is linked to TBX3 and RBM19 and is bound by 98 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TBX3 479.7 kb Distal Multiome+HiCAR
RBM19 1197.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:115,158,558 – 115,169,209
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 147 bp overlap
Ascl2 2 datasets
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 2 datasets
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BRD4 2 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 261 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 290 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 126 bp overlap
CDX1 2 datasets
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
Motif DE_72h DE_72h-CDX1_MA0878.3 10 bp overlap
CDX2 3 datasets
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 164 bp overlap
Motif DE_48h DE_48h-CDX2_MA0465.3 8 bp overlap
Motif DE_72h DE_72h-CDX2_MA0465.3 8 bp overlap
CDX4 2 datasets
Motif DE_48h DE_48h-CDX4_MA1473.2 9 bp overlap
Motif DE_72h DE_72h-CDX4_MA1473.2 9 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 346 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 220 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 347 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 461 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 254 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 405 bp overlap
DMRT3 2 datasets
Motif DE_36h DE_36h-DMRT3_MA0610.2 7 bp overlap
Motif DE_72h DE_72h-DMRT3_MA0610.2 7 bp overlap
DMRTA1 2 datasets
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_72h DE_72h-DMRTA1_MA1707.2 10 bp overlap
DMRTC2 2 datasets
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_72h DE_72h-DMRTC2_MA1479.2 11 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 130 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 348 bp overlap
ESRRA 1 dataset
Motif DE_48h DE_48h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_48h DE_48h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 227 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 183 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 196 bp overlap
EZH2 4 datasets
ChIP neural progenitor cell ENCFF018MKA 651 bp overlap
ChIP neural progenitor cell ENCFF018MKA 470 bp overlap
ChIP neural progenitor cell ENCFF472NFV 557 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 364 bp overlap
Esrrg 1 dataset
Motif DE_48h DE_48h-Esrrg_MA0643.2 9 bp overlap
FOXA1 3 datasets
Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 397 bp overlap
FOXA2 6 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 228 bp overlap
ChIP DE DE-FOXA2-1 595 bp overlap
ChIP DE DE-FOXA2-2 546 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 355 bp overlap
FOXA3 2 datasets
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXB1 2 datasets
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 2 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXF2 2 datasets
Motif DE_48h DE_48h-FOXF2_MA0030.2 9 bp overlap
Motif DE_72h DE_72h-FOXF2_MA0030.2 9 bp overlap
FOXI1 2 datasets
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXP1 2 datasets
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
FOXP4 2 datasets
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
GATA1 2 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 530 bp overlap
ChIP DE DE-GATA4-2 651 bp overlap
ChIP foregut GSE117136.GATA4.foregut 542 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 570 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 545 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 158 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 157 bp overlap
ChIP DE DE-GATA6-1 579 bp overlap
ChIP DE DE-GATA6-2 623 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 551 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 651 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 481 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 536 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 651 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 534 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 530 bp overlap
ChIP foregut GSE117136.GATA6.foregut 538 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 377 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 514 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 415 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 496 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
HOXA10 2 datasets
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXD9 2 datasets
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 374 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 308 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 241 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 372 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 231 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 374 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 384 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MYOG 2 datasets
Motif DE_48h DE_48h-MYOG_MA0500.3 8 bp overlap
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 375 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 298 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 193 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 242 bp overlap
NR2C1 1 dataset
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap
NR2F2 1 dataset
Motif DE_48h DE_48h-NR2F2_MA1111.2 7 bp overlap
NR4A2 1 dataset
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
NR5A1 1 dataset
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
Neurod2 2 datasets
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 291 bp overlap
Olig2 2 datasets
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 169 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 309 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 291 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 345 bp overlap
PHOX2A 4 datasets
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 205 bp overlap
POU4F2 2 datasets
Motif DE_48h DE_48h-POU4F2_MA0683.2 15 bp overlap
Motif DE_72h DE_72h-POU4F2_MA0683.2 15 bp overlap
PROP1 4 datasets
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Ppara 1 dataset
Motif DE_48h DE_48h-Ppara_MA2338.1 7 bp overlap
RARA 1 dataset
Motif DE_48h DE_48h-RARA_MA0730.1 17 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 151 bp overlap
ChIP neural ENCSR000BTV.REST.neural 324 bp overlap
RORA 1 dataset
Motif DE_48h DE_48h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 400 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 279 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 240 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 530 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 651 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 617 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 502 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 563 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 404 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 493 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 545 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 260 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 161 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 251 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 346 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 177 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX15 2 datasets
Motif DE_36h DE_36h-SOX15_MA1152.2 7 bp overlap
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 485 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 484 bp overlap
SRF 2 datasets
Motif DE_48h DE_48h-SRF_MA0083.3 16 bp overlap
Motif DE_72h DE_72h-SRF_MA0083.3 16 bp overlap
STAT3 1 dataset
ChIP HepaRG_sodium-oleate GSE89157.STAT3.HepaRG_sodium-oleate 260 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 222 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
Tcf12 2 datasets
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
Motif DE_48h DE_48h-USF1_MA0093.4 10 bp overlap
ZNF135 1 dataset
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF136 2 datasets
Motif DE_36h DE_36h-ZNF136_MA1588.1 15 bp overlap
Motif DE_72h DE_72h-ZNF136_MA1588.1 15 bp overlap
ZNF317 2 datasets
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF324 2 datasets
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 129 bp overlap
ZNF582 2 datasets
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF667 2 datasets
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF816 1 dataset
ChIP HEK293 GSE76494.ZNF816.HEK293 208 bp overlap