chr12 : 47,068,476 47,068,987
511 bp 87 TFs 0 linked genes
This 511 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:47,063,476 – 47,073,987
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 153 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 304 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 149 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 143 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 286 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 301 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 133 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 224 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 207 bp overlap
BRCA1 1 dataset
ChIP SH-EP_MYCNER_plusOHT GSE111905.BRCA1.SH-EP_MYCNER_plusOHT 245 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 421 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 340 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 222 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 384 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 276 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 191 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 138 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 394 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 222 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 405 bp overlap
CHD7 2 datasets
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 339 bp overlap
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 203 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 123 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 145 bp overlap
CTNNB1 2 datasets
ChIP LS180 GSE31939.CTNNB1.LS180 126 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 346 bp overlap
E2F6 3 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 254 bp overlap
ESR1 6 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 174 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 330 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 507 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 341 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 255 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 360 bp overlap
FLI1 3 datasets
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 268 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 250 bp overlap
ChIP A-673_D7 GSE129155.FLI1.A-673_D7 252 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 292 bp overlap
ChIP BT-549 GSE112961.FOSL1.BT-549 250 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 342 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 413 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 148 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 73 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 413 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 447 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 505 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 197 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 183 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 242 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 212 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 440 bp overlap
HDAC2 3 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 144 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 157 bp overlap
HEXIM1 1 dataset
ChIP A-375_DMSO GSE68052.HEXIM1.A-375_DMSO 149 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 403 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 148 bp overlap
JUN 5 datasets
ChIP BT-549 GSE46166.JUN.BT-549 186 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 297 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 388 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 365 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 265 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 184 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 126 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 213 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 86 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP NB4 ENCFF966MWB 277 bp overlap
MED1 6 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 332 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 213 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 187 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 355 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 317 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 290 bp overlap
MYC 6 datasets
ChIP DLD-1_MYC-activated GSE117240.MYC.DLD-1_MYC-activated 193 bp overlap
ChIP MCF-7 ENCFF542NWJ 305 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 178 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 120 bp overlap
ChIP NB4 ENCFF142PRP 317 bp overlap
ChIP U-87MG GSE36354.MYC.U-87MG 191 bp overlap
MYCN 2 datasets
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 124 bp overlap
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 286 bp overlap
MYOD1 2 datasets
ChIP RD GSE137168.MYOD1.RD 338 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 343 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 110 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 211 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 118 bp overlap
NFE2L2 1 dataset
ChIP A-375_DMSO GSE57431.NFE2L2.A-375_DMSO 287 bp overlap
NR4A2 1 dataset
Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 136 bp overlap
POLR2A 1 dataset
ChIP MCF-7 ENCFF309IKZ 153 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 185 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 345 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RBPJ 2 datasets
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
ChIP MDA-MB-157 GSE116868.RBPJ.MDA-MB-157 401 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 307 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 112 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 253 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 423 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 401 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 213 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 284 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 391 bp overlap
SMARCA4 7 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 144 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 157 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 166 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 234 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 189 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 361 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 488 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 126 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 200 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 311 bp overlap
SMARCC1 7 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 384 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 445 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 398 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 226 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 297 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 359 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 206 bp overlap
SNAI2 1 dataset
ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 239 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 180 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
SS18 4 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 235 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 406 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 389 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 464 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 256 bp overlap
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 172 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 469 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 295 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 267 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 178 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 413 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 249 bp overlap
Tfcp2l1 1 dataset
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 216 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 136 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 207 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 453 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 472 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 283 bp overlap
ZNF282 1 dataset
Motif DE_24h DE_24h-ZNF282_MA1154.2 15 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 184 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 173 bp overlap
ZNF418 1 dataset
Motif DE_24h DE_24h-ZNF418_MA1980.1 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 291 bp overlap
ZNF75A 2 datasets
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 2 datasets
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap