chr12 : 39,393,918 – 39,394,264
346 bp 93 TFs 0 linked genes
This 346 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:39,388,918 – 39,399,264
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 219 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 326 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 188 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 174 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 226 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 264 bp overlap
BRD4 7 datasets
ChIP BE2C GSE80151.BRD4.BE2C 346 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 322 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 346 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 239 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 266 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 128 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 346 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 128 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 336 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 232 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 346 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 119 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 181 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 227 bp overlap
ERF::FOXO1 2 datasets
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
Motif ES_0h ES_0h-ERFFOXO1_MA1936.2 12 bp overlap
ERF::NHLH1 4 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 335 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 144 bp overlap
GATA1::TAL1 1 dataset
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 346 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 320 bp overlap
ChIP SK-N-SH ENCFF764OZD 323 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 181 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 195 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 267 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 171 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 314 bp overlap
ChIP SK-N-SH ENCFF040SSB 338 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 346 bp overlap
HSF1 2 datasets
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap
HSF2 2 datasets
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IRF5 1 dataset
Motif DE_12h DE_12h-IRF5_MA1420.1 14 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 346 bp overlap
Isl1 2 datasets
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 296 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 285 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 346 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 134 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 131 bp overlap
MAFK 2 datasets
ChIP HepG2 ENCFF743ZOF 175 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 145 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 310 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 142 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 275 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 295 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 346 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 346 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 236 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 346 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 346 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 346 bp overlap
ChIP hESC GSE20650.NANOG.hESC 298 bp overlap
ChIP hESC GSE18292.NANOG.hESC 287 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PAX3 2 datasets
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
Motif ES_0h ES_0h-PAX3_MA0780.1 10 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 82 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 346 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 223 bp overlap
POU5F1 14 datasets
ChIP BG03 GSE21614.POU5F1.BG03 201 bp overlap
ChIP GM23338 ENCFF333SNB 278 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 346 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 346 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 346 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 174 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 274 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 201 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 247 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 341 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 346 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 215 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 207 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Pax7 2 datasets
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 262 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 319 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 123 bp overlap
RBPJ 3 datasets
ChIP GIC GSE79734.RBPJ.GIC 297 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 316 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 256 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 261 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 252 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 276 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 182 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 253 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 293 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 222 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 152 bp overlap
SMARCA4 7 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 226 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 200 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 346 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 346 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 346 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 346 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 346 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 346 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 346 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 323 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 346 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 346 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 187 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 346 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 146 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 302 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 212 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 285 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 318 bp overlap
ChIP WTC11 ENCFF688PEU 346 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 300 bp overlap
VENTX 2 datasets
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB17 2 datasets
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
Motif ES_0h ES_0h-ZBTB17_MA2102.1 8 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 329 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 283 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
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