chr11 : 127,182,839 – 127,183,541
702 bp 92 TFs 1 linked gene
This 702 bp open chromatin element is linked to KIRREL3 and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KIRREL3 179.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:127,177,839 – 127,188,541
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 421 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 450 bp overlap
ATF4 1 dataset
Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap
Ahr::Arnt 2 datasets
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 303 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 356 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 314 bp overlap
BRD4 14 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 289 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 60 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 315 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 103 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 428 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 144 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 409 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 158 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 327 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 542 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 371 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 436 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 404 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 306 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 59 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 97 bp overlap
CEBPB 8 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 51 bp overlap
ChIP A549 ENCFF235AIY 89 bp overlap
ChIP H1 ENCFF871PTR 99 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 109 bp overlap
ChIP HepG2 ENCFF536NTI 69 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 53 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 82 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 81 bp overlap
CEBPG 1 dataset
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 149 bp overlap
CTCF 14 datasets
ChIP BE2C ENCFF757SRF 313 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 199 bp overlap
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 103 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 159 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 199 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 283 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 113 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 124 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 193 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 250 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 188 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 215 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 437 bp overlap
CTCFL 2 datasets
Motif DE_48h DE_48h-CTCFL_MA1102.3 8 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 149 bp overlap
Cebpa 16 datasets
ChIP BLaER1 ENCFF093OYK 183 bp overlap
ChIP BLaER1 ENCFF140EYR 211 bp overlap
ChIP BLaER1 ENCFF250ODG 180 bp overlap
ChIP BLaER1 ENCFF262VBH 232 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
ChIP BLaER1 ENCFF346MCV 103 bp overlap
ChIP BLaER1 ENCFF364PUR 191 bp overlap
ChIP BLaER1 ENCFF399AYC 160 bp overlap
ChIP BLaER1 ENCFF460KDD 187 bp overlap
ChIP BLaER1 ENCFF508JZF 182 bp overlap
ChIP BLaER1 ENCFF680YXW 63 bp overlap
ChIP BLaER1 ENCFF798NMV 112 bp overlap
ChIP BLaER1 ENCFF844FIP 139 bp overlap
ChIP BLaER1 ENCFF858JKM 190 bp overlap
ChIP BLaER1 ENCFF858JKM 389 bp overlap
ChIP BLaER1 ENCFF896HSY 178 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
ELK1::HOXA1 1 dataset
Motif DE_48h DE_48h-ELK1HOXA1_MA1931.1 14 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 135 bp overlap
ERF::FOXI1 1 dataset
Motif DE_48h DE_48h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 1 dataset
Motif DE_48h DE_48h-ERFFOXO1_MA1936.2 12 bp overlap
ETV1 2 datasets
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_48h DE_48h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXI1 1 dataset
Motif DE_48h DE_48h-ETV5FOXI1_MA1946.2 12 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 381 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 437 bp overlap
FLI1::DRGX 1 dataset
Motif DE_48h DE_48h-FLI1DRGX_MA1949.2 14 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_48h DE_48h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 601 bp overlap
ChIP DE DE-FOXA2-2 702 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 338 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_48h DE_48h-FOXO1ELK1_MA1954.2 13 bp overlap
GATA1::TAL1 1 dataset
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 196 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 414 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 108 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 247 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 216 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 347 bp overlap
ChIP BE2C GSE65664.GATA3.BE2C 94 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 212 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 265 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 52 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 348 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 228 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 290 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 634 bp overlap
ChIP DE DE-GATA4-2 663 bp overlap
ChIP foregut GSE117136.GATA4.foregut 408 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 663 bp overlap
ChIP DE DE-GATA6-2 702 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 390 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 371 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 459 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 572 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 423 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 409 bp overlap
ChIP foregut GSE117136.GATA6.foregut 264 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 382 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 283 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 102 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 273 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 467 bp overlap
HOXB2::ELK1 1 dataset
Motif DE_48h DE_48h-HOXB2ELK1_MA1957.1 14 bp overlap
HSF4 2 datasets
Motif DE_36h DE_36h-HSF4_MA0771.1 13 bp overlap
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 334 bp overlap
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 174 bp overlap
Ikzf3 2 datasets
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 163 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 280 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 216 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 230 bp overlap
MYCN 6 datasets
ChIP Kelly GSE94822.MYCN.Kelly 277 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 205 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 236 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 158 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 216 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 125 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 421 bp overlap
NFIB 1 dataset
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
Motif DE_48h DE_48h-NFIC_MA1527.2 15 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 164 bp overlap
NFIL3 1 dataset
Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA1528.2 14 bp overlap
NFYA 1 dataset
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
NR1H4::RXRA 1 dataset
Motif DE_48h DE_48h-NR1H4RXRA_MA1146.2 13 bp overlap
NR4A2::RXRA 1 dataset
Motif DE_48h DE_48h-NR4A2RXRA_MA1147.2 13 bp overlap
PAX3 1 dataset
Motif DE_36h DE_36h-PAX3_MA1546.2 14 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 401 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 66 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 371 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 159 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 194 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 142 bp overlap
SETDB1 1 dataset
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 302 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 617 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 422 bp overlap
SMARCA4 5 datasets
ChIP NGP GSE134626.SMARCA4.NGP 182 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 143 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 310 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 78 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 337 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 204 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 180 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 183 bp overlap
SOX10 2 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 446 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 560 bp overlap
STAT1::STAT2 1 dataset
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 179 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 227 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 241 bp overlap
ChIP BE2C GSE84389.TEAD4.BE2C 101 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 241 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 101 bp overlap
TEF 1 dataset
Motif DE_48h DE_48h-TEF_MA0843.2 10 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 143 bp overlap
TRIM28 6 datasets
ChIP HEK293 ENCFF265CEM 546 bp overlap
ChIP HEK293 ENCFF265CEM 602 bp overlap
ChIP HEK293 ENCFF582MWI 532 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 439 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 442 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 437 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 178 bp overlap
ZFP14 2 datasets
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
ZNF140 1 dataset
Motif DE_48h DE_48h-ZNF140_MA1589.2 19 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF189 1 dataset
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 477 bp overlap
ZNF282 1 dataset
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 317 bp overlap
ZNF701 2 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
ZNF707 1 dataset
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 186 bp overlap
Zfx 2 datasets
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap
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