chr11 : 105,611,474 – 105,612,450
976 bp 98 TFs 1 linked gene
This 976 bp open chromatin element is linked to GRIA4 and is bound by 98 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GRIA4 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:105,606,474 – 105,617,450
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 276 bp overlap
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 383 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 219 bp overlap
BRD4 12 datasets
ChIP BE2C GSE80151.BRD4.BE2C 665 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 243 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 175 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 665 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 514 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 272 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 141 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 282 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 139 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 296 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 346 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 348 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 341 bp overlap
ChIP A-549 ENCSR616MOB.CBX8.A-549 346 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 452 bp overlap
CXXC5 1 dataset
ChIP prostate-cancer GSE136128.CXXC5.prostate-cancer 174 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 156 bp overlap
DMRTC2 2 datasets
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
Motif ES_0h ES_0h-DMRTC2_MA1479.2 11 bp overlap
ELK1::HOXA1 1 dataset
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 409 bp overlap
ESR1 4 datasets
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
Motif ES_0h ES_0h-ESR1_MA0112.4 15 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 200 bp overlap
ESR2 2 datasets
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 22 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 209 bp overlap
ChIP GM23248 ENCFF404ZHM 299 bp overlap
ChIP GM23248 ENCFF404ZHM 521 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 301 bp overlap
ChIP T-REx-293_K27WT_12h GSE118954.EZH2.T-REx-293_K27WT_12h 194 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 157 bp overlap
ChIP T-REx-293_K27WT_72h GSE118954.EZH2.T-REx-293_K27WT_72h 274 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 442 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 394 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 337 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 706 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 180 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 780 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 422 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP keratinocyte ENCFF070STK 390 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 306 bp overlap
ChIP neural progenitor cell ENCFF472NFV 267 bp overlap
ChIP neural progenitor cell ENCFF472NFV 749 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 533 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 326 bp overlap
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 154 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 683 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GCM1 1 dataset
Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap
GCM2 1 dataset
Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HOXB13 2 datasets
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
IRF4 3 datasets
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 146 bp overlap
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 142 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 131 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 110 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 201 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 176 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 217 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 846 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 269 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 105 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 821 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 582 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 196 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 636 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 191 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 371 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 352 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 4 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
ONECUT1 1 dataset
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 474 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 697 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP Peyer's patch ENCFF767HVN 417 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU4F2 2 datasets
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 141 bp overlap
POU5F1 5 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 722 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 358 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 491 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 2 datasets
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 58 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 357 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 138 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RNF2 2 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 285 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 290 bp overlap
RXRB 2 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
RXRG 2 datasets
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap
Rxra 2 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 152 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 565 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 267 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 382 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 218 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 189 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 410 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 211 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 314 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 206 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 7 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 148 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 110 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 71 bp overlap
ChIP OCI-Ly10 GSE56857.SPI1.OCI-Ly10 124 bp overlap
ChIP OCI-Ly3 GSE56857.SPI1.OCI-Ly3 118 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 66 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 68 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 124 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 196 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 140 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 3 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 198 bp overlap
SUZ12 2 datasets
ChIP hiPSC GSE124903.SUZ12.hiPSC 551 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 248 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 292 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 183 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 172 bp overlap
TEAD1 1 dataset
ChIP CCLP1 GSE62272.TEAD1.CCLP1 143 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
THAP1 4 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 175 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF184 4 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ChIP WTC11 ENCFF352POG 497 bp overlap
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF282 2 datasets
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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