chr10 : 133,151,583 133,151,983
400 bp 70 TFs 1 linked gene
This 400 bp open chromatin element is linked to KNDC1 and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
KNDC1 8.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:133,146,583 – 133,156,983
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 177 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 400 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 196 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 283 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 181 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 330 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 133 bp overlap
CBX8 3 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 400 bp overlap
ChIP K562 ENCFF485TBL 279 bp overlap
ChIP K562 ENCFF485TBL 80 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 197 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 256 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 400 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 207 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 74 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 191 bp overlap
EPAS1 1 dataset
ChIP ccRCC GSE86092.EPAS1.ccRCC 162 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 350 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 400 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 378 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 237 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 261 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 159 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 60 bp overlap
FOSL2 1 dataset
ChIP A-549 ENCSR000BQO.FOSL2.A-549 173 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 259 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 320 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 187 bp overlap
GATA2 4 datasets
ChIP ESF GSE108408.GATA2.ESF 264 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 322 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 297 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 282 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 296 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 213 bp overlap
HNF4A 6 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 320 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 127 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 216 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 321 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 351 bp overlap
ChIP hiPSC GSE104613.HNF4A.hiPSC 241 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 400 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 400 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 400 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 364 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 400 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 400 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 400 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 400 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 283 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 110 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 114 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 197 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 175 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 323 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 229 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 352 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 246 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 381 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 300 bp overlap
MXI1 2 datasets
ChIP H1 ENCFF963FZS 241 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 180 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 277 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 400 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 400 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 188 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 400 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 400 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 400 bp overlap
ChIP hESC GSE20650.NANOG.hESC 303 bp overlap
ChIP hESC GSE18292.NANOG.hESC 112 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 245 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 214 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 243 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 232 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 149 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 204 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 296 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 400 bp overlap
ChIP H1 ENCFF566JSR 244 bp overlap
ChIP H1 ENCFF833NJP 400 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 118 bp overlap
POU5F1 9 datasets
ChIP GM23338 ENCFF333SNB 226 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 400 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 400 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 235 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 244 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 146 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 400 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 400 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 227 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 400 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 243 bp overlap
RNF2 5 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 393 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 263 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 220 bp overlap
ChIP K562 ENCFF653BQJ 298 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 128 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 206 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF896IJG 205 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 232 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 223 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 266 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 400 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 286 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 169 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 297 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 194 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 180 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 235 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 185 bp overlap
SMARCA4 10 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 393 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 320 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 315 bp overlap
ChIP K562 ENCFF316MCJ 389 bp overlap
ChIP K562 ENCFF316MCJ 190 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 271 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 400 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 166 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 400 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 400 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 359 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 302 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 176 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 224 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 344 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 400 bp overlap
SOX2 7 datasets
ChIP H9 GSE46837.SOX2.H9 250 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 400 bp overlap
ChIP NPC GSE122631.SOX2.NPC 211 bp overlap
ChIP hESC GSE69479.SOX2.hESC 308 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 358 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 234 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 206 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 286 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 255 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 323 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 233 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 233 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 400 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 352 bp overlap
TBP 7 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 207 bp overlap
ChIP hESC GSE122298.TBP.hESC 358 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 219 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 206 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 169 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 389 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 224 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 400 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 372 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 225 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 400 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 261 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 400 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 202 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 175 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 114 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 147 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 142 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 269 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 356 bp overlap