chr9 : 124,760,800 124,761,064
264 bp 67 TFs 1 linked gene
This 264 bp open chromatin element is linked to ENSG00000236643 and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000236643 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:124,755,800 – 124,766,064
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 264 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 262 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 182 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 129 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 242 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 264 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 216 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 225 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 142 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 250 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 172 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 68 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 163 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 243 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 142 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 264 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 264 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 206 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 149 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 264 bp overlap
ChIP DE DE-FOXA2-2 230 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 254 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 264 bp overlap
ChIP DE DE-GATA4-2 264 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 264 bp overlap
ChIP DE DE-GATA6-2 264 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 264 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 264 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 253 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 264 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 168 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 217 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 264 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 237 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 264 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 264 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 264 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 264 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 130 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 232 bp overlap
LEF1 1 dataset
ChIP hESC GSE64758.LEF1.hESC 173 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 264 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 264 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 255 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 264 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 264 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 264 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 264 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 219 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 264 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 264 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 264 bp overlap
ChIP hESC GSE20650.NANOG.hESC 264 bp overlap
ChIP hESC GSE18292.NANOG.hESC 197 bp overlap
NIPBL 5 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 264 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 258 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 264 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 264 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 264 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 244 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 264 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 254 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 264 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 264 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 264 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 140 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 264 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 264 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 254 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 264 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 254 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 246 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 264 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 264 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 264 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 264 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 183 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 233 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 120 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 177 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 264 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 249 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 264 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 264 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 264 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 255 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 245 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 264 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 257 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 120 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 264 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 264 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 264 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 264 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 264 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 264 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 264 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 264 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 264 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 264 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 201 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 264 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 160 bp overlap
ChIP hESC GSE69479.SOX2.hESC 228 bp overlap
ChIP hESC GSE18292.SOX2.hESC 133 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 264 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 264 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 232 bp overlap
ChIP WTC11 ENCFF688PEU 264 bp overlap
SPI1 2 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 195 bp overlap
ChIP K562 ENCFF410ORC 201 bp overlap
SRF 2 datasets
ChIP K-562 ENCSR582IAO.SRF.K-562 172 bp overlap
ChIP K562 ENCFF766EOO 264 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 264 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 264 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 155 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 264 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 252 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 155 bp overlap
ChIP hESC GSE122298.TBP.hESC 204 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 186 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 201 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 232 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 256 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 264 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 247 bp overlap
ChIP H1 ENCFF778PAX 240 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 264 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 212 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 264 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 171 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 264 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 264 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 245 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 264 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 264 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 264 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 264 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 207 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 165 bp overlap