chr9 : 124,013,889 124,014,123
234 bp 72 TFs 1 linked gene
This 234 bp open chromatin element is linked to LHX2 and is bound by 72 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LHX2 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:124,008,889 – 124,019,123
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 158 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 234 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 234 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 234 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 231 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 226 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 76 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 91 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 234 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 121 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 234 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 171 bp overlap
ChIP H1 ENCFF095JHA 234 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 234 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 234 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 92 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 234 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 231 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 124 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 234 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 234 bp overlap
CTCF 25 datasets
ChIP AG09309 ENCFF478XPS 234 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 230 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP H1 ENCFF764RHO 234 bp overlap
ChIP H9 ENCFF152GTF 234 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 141 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 166 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 146 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 170 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 158 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 234 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 173 bp overlap
ChIP endodermal cell ENCFF471YCZ 184 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 210 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 154 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 182 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 192 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 147 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 158 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 214 bp overlap
ChIP neural cell ENCFF335ADI 234 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 135 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 234 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 234 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 225 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 116 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 234 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 234 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 234 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 217 bp overlap
EZH2 12 datasets
ChIP A673 ENCFF790MVL 86 bp overlap
ChIP A673 ENCFF955JRZ 87 bp overlap
ChIP B cell ENCFF803EMO 234 bp overlap
ChIP GM23338 ENCFF613YON 234 bp overlap
ChIP GM23338 ENCFF886DXX 234 bp overlap
ChIP H1 ENCFF232NZA 234 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 234 bp overlap
ChIP hepatocyte ENCFF552DZB 234 bp overlap
ChIP keratinocyte ENCFF070STK 234 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 234 bp overlap
ChIP neural progenitor cell ENCFF018MKA 234 bp overlap
ChIP neural progenitor cell ENCFF472NFV 234 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 228 bp overlap
GATAD2B 3 datasets
ChIP GM12878 ENCFF781IAU 234 bp overlap
ChIP GM12878 ENCFF781IAU 234 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 196 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 170 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 207 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 197 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 234 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 199 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 198 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 230 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 71 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 119 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 106 bp overlap
KMT2A 1 dataset
ChIP IMS-M2_VTP GSE129636.KMT2A.IMS-M2_VTP 123 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 152 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 185 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 185 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 224 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 234 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 171 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 207 bp overlap
NRF1 8 datasets
ChIP K-562 ENCSR998AJK.NRF1.K-562 205 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 185 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 190 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 198 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 129 bp overlap
ChIP K562 ENCFF130SGK 234 bp overlap
ChIP K562 ENCFF689EWI 234 bp overlap
ChIP K562 ENCFF791UHF 234 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 138 bp overlap
PAX5 1 dataset
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 62 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 234 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 234 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 224 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 234 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 234 bp overlap
RAD21 11 datasets
ChIP GM12878 ENCFF101UQZ 186 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 114 bp overlap
ChIP H1 ENCFF698EWO 229 bp overlap
ChIP H1 ENCFF967OJF 211 bp overlap
ChIP HepG2 ENCFF906QIS 215 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP SK-N-SH ENCFF747MAS 234 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 151 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 132 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 234 bp overlap
ChIP neural cell ENCFF564MOT 204 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 234 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 226 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 234 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 118 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 234 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 217 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 185 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 113 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 234 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 192 bp overlap
ChIP neural cell ENCFF795YGY 234 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 234 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 221 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 127 bp overlap
ChIP OCI-AML-3 GSE111537.STAG1.OCI-AML-3 156 bp overlap
ChIP OCI-AML-3_deltaSTAG2 GSE111537.STAG1.OCI-AML-3_deltaSTAG2 202 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 201 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 137 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF507HGF 204 bp overlap
ChIP H1 ENCFF881NFR 234 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 66 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 234 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TET2 1 dataset
ChIP Jurkat_RUNX1KD GSE85524.TET2.Jurkat_RUNX1KD 194 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 234 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 188 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 100 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 194 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 117 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 106 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 194 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 72 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 234 bp overlap