chr9 : 124,005,375 124,005,788
413 bp 88 TFs 1 linked gene
This 413 bp open chromatin element is linked to LHX2 and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LHX2 6.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:124,000,375 – 124,010,788
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 263 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 413 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 413 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 348 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 413 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 401 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 50 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 295 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 137 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 167 bp overlap
ERG 2 datasets
ChIP VCaP GSE83650.ERG.VCaP 168 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 168 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 322 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 188 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 359 bp overlap
EZH2 20 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 263 bp overlap
ChIP A673 ENCFF790MVL 357 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 338 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 71 bp overlap
ChIP H1 ENCFF232NZA 413 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 58 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 294 bp overlap
ChIP T98G GSE112240.EZH2.T98G 257 bp overlap
ChIP astrocyte ENCFF365JTP 413 bp overlap
ChIP astrocyte ENCFF365JTP 176 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 292 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 254 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 55 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 413 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 134 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 199 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 350 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 296 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 311 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 276 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCFF282FWZ 79 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 238 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 344 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 413 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 233 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 267 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HOXB13 7 datasets
ChIP G-401 GSE65381.HOXB13.G-401 205 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 82 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 159 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 72 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 139 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 97 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 82 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 71 bp overlap
ChIP GM12878 ENCFF824TGK 347 bp overlap
IKZF2 4 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 196 bp overlap
ChIP GM12878 ENCFF918AID 276 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 156 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 191 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 141 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 125 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 54 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
JARID2 5 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 413 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 413 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 413 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 234 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 239 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 413 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 212 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 364 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 393 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 198 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 411 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 413 bp overlap
JUND 2 datasets
ChIP WA01 ENCSR000EBZ.JUND.WA01 187 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 96 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 160 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 362 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 118 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 194 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 413 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 410 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 230 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 413 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 413 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 387 bp overlap
ChIP hESC GSE20650.NANOG.hESC 334 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 236 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 368 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 315 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 242 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 387 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 230 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 359 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 413 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 374 bp overlap
ChIP H1 ENCFF833NJP 107 bp overlap
POU5F1 15 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 286 bp overlap
ChIP GM23338 ENCFF333SNB 297 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 413 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 364 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 413 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 148 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 342 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 239 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 194 bp overlap
ChIP hESC GSE20650.POU5F1.hESC 135 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 413 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 413 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 348 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 232 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 279 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 413 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 413 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 391 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 188 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 301 bp overlap
ChIP H1 ENCFF239FFS 405 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 413 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 413 bp overlap
SFMBT1 1 dataset
ChIP HeLa GSE45441.SFMBT1.HeLa 271 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 224 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 413 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 413 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 413 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 413 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 413 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 413 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 413 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 413 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 413 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 353 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 362 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 398 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 152 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 222 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 225 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 139 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 326 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 266 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 67 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 328 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 53 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 347 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 105 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 413 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 327 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 139 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 231 bp overlap
STAT3 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 71 bp overlap
SUZ12 1 dataset
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 264 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 251 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 300 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 218 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 248 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 161 bp overlap
ZNF671 1 dataset
ChIP HEK293T GSE78099.ZNF671.HEK293T 182 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 137 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap