chr9 : 68,894,403 68,895,261
858 bp 84 TFs 4 linked genes
This 858 bp open chromatin element is linked to 4 target genes and is bound by 84 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
PABIR1 114.7 kb Distal Multiome
FXN 141.0 kb Distal Multiome
PIP5K1B 189.6 kb Distal Multiome
TJP2 226.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:68,889,403 – 68,900,261
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 262 bp overlap
ChIP H-1_DE GSE126661.BRD3.H-1_DE 218 bp overlap
BRD4 7 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 262 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 322 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 229 bp overlap
ChIP SGBS_TNF GSE64233.BRD4.SGBS_TNF 230 bp overlap
ChIP SGBS_TNF GSE64233.BRD4.SGBS_TNF 191 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 260 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 174 bp overlap
Bach1::Mafk 3 datasets
Motif DE_36h DE_36h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_48h DE_48h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 125 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 363 bp overlap
EP300 1 dataset
ChIP upper lobe of left lung ENCFF720RAR 241 bp overlap
ERG 5 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 170 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 246 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 310 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 202 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 228 bp overlap
FEZF1 2 datasets
ChIP HEK293 GSE76494.FEZF1.HEK293 119 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 190 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 194 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 196 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 225 bp overlap
ChIP DE DE-FOXA2-1 858 bp overlap
ChIP DE DE-FOXA2-2 704 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 159 bp overlap
FOXH1 3 datasets
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 127 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 727 bp overlap
ChIP DE DE-GATA4-2 810 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 529 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 315 bp overlap
ChIP foregut GSE117136.GATA4.foregut 461 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 638 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 316 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 530 bp overlap
ChIP AGS GSE51936.GATA6.AGS 126 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 116 bp overlap
ChIP DE DE-GATA6-1 727 bp overlap
ChIP DE DE-GATA6-2 817 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 465 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 553 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 482 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 818 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 639 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 648 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 194 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 218 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 329 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 517 bp overlap
ChIP foregut GSE117136.GATA6.foregut 470 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 510 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 311 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 353 bp overlap
IKZF1 3 datasets
ChIP BCR-ABL1 GSE58825.IKZF1.BCR-ABL1 179 bp overlap
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 312 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 195 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 220 bp overlap
IRF7 1 dataset
Motif DE_60h DE_60h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 326 bp overlap
ChIP L826 GSE83671.KMT2A.L826 345 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 219 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MAF 1 dataset
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap
MAFF 1 dataset
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
MAFG::NFE2L1 3 datasets
Motif DE_36h DE_36h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_48h DE_48h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 8 datasets
ChIP A549 ENCFF371EPR 381 bp overlap
Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
ChIP HepG2 ENCFF767LDG 257 bp overlap
MED1 2 datasets
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 384 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 285 bp overlap
MXI1 2 datasets
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 276 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 208 bp overlap
Mafg 4 datasets
Motif DE_36h DE_36h-Mafg_MA0659.4 12 bp overlap
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
NFIB 3 datasets
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
Motif DE_60h DE_60h-NFIB_MA1643.2 17 bp overlap
NFIC 4 datasets
Motif DE_36h DE_36h-NFIC_MA1527.2 15 bp overlap
Motif DE_48h DE_48h-NFIC_MA1527.2 15 bp overlap
Motif DE_60h DE_60h-NFIC_MA1527.2 15 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 231 bp overlap
NFIC::TLX1 3 datasets
Motif DE_36h DE_36h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_48h DE_48h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_60h DE_60h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 3 datasets
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
Motif DE_48h DE_48h-NFIX_MA1528.2 14 bp overlap
Motif DE_60h DE_60h-NFIX_MA1528.2 14 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 71 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 256 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 345 bp overlap
POU6F2 1 dataset
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 353 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
RELA 11 datasets
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 241 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 434 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 158 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 166 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 324 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 180 bp overlap
REST 3 datasets
Motif DE_48h DE_48h-REST_MA0138.3 20 bp overlap
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
Motif DE_72h DE_72h-REST_MA0138.3 20 bp overlap
RORB 1 dataset
Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_60h DE_60h-RORC_MA1151.2 10 bp overlap
SATB1 1 dataset
Motif DE_60h DE_60h-SATB1_MA1963.2 7 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 290 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 858 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 534 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 398 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 463 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 858 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 858 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 230 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 273 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 551 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 212 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 308 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 262 bp overlap
SMC3 1 dataset
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 217 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 320 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 506 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 383 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 245 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
TCF7 1 dataset
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 505 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 410 bp overlap
TEAD1 1 dataset
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 353 bp overlap
ZFP42 2 datasets
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 151 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 296 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 417 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 233 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF558 5 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF707 3 datasets
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 228 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 168 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 225 bp overlap