chr9 : 37,787,123 – 37,787,376
253 bp 91 TFs 2 linked genes
This 253 bp open chromatin element is linked to EXOSC3 and ENSG00000289295 and is bound by 91 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EXOSC3 2.1 kb Proximal Proximity
ENSG00000289295 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:37,782,123 – 37,792,376
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
AGO1 3 datasets
ChIP K-562 ENCSR641BSL.AGO1.K-562 253 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 253 bp overlap
ChIP K562 ENCFF741BCI 253 bp overlap
AR 3 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 253 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 253 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 253 bp overlap
ATF3 2 datasets
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 116 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 195 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 147 bp overlap
BRD4 8 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 221 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 210 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 253 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 186 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 107 bp overlap
ChIP hESC GSE33281.BRD4.hESC 76 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 253 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 253 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 253 bp overlap
CBX1 2 datasets
ChIP K-562 ENCSR948QLZ.CBX1.K-562 210 bp overlap
ChIP K562 ENCFF008KGK 253 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 159 bp overlap
CHAMP1 2 datasets
ChIP K562 ENCFF860ZIW 253 bp overlap
ChIP K562 ENCFF860ZIW 99 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 133 bp overlap
CTCF 26 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 253 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
ChIP GM10248 ENCFF226VLZ 165 bp overlap
ChIP GM12864 ENCFF357DQE 224 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 184 bp overlap
ChIP GM23338 ENCFF531QOI 224 bp overlap
ChIP GM23338 ENCFF772DML 164 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 205 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 119 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 114 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 129 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 126 bp overlap
ChIP endodermal cell ENCFF471YCZ 116 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 111 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 99 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 137 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 226 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 184 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 253 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 128 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 165 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 149 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 238 bp overlap
ChIP BLaER1 ENCFF364PUR 253 bp overlap
E2F6 3 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 253 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 189 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 253 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 253 bp overlap
ESR1 4 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 253 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 97 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 93 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 166 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FIP1L1 2 datasets
ChIP K-562 GSE120104.FIP1L1.K-562 182 bp overlap
ChIP K-562 ENCSR177DNR.FIP1L1.K-562 149 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 253 bp overlap
GATA4 1 dataset
ChIP KATO-III GSE51705.GATA4.KATO-III 205 bp overlap
GTF2F1 3 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 211 bp overlap
ChIP K562 ENCFF940JZP 253 bp overlap
ChIP K562 ENCFF940JZP 133 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 253 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 253 bp overlap
HNRNPLL 1 dataset
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 182 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 167 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 172 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 103 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 178 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 122 bp overlap
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF6 1 dataset
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 210 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 216 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 204 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MTF1 1 dataset
Motif DE_24h DE_24h-MTF1_MA0863.1 14 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 71 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 221 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 200 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 229 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 111 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 253 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 253 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 253 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 223 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCBP1 1 dataset
ChIP K-562 ENCSR052PTN.PCBP1.K-562 253 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 253 bp overlap
POLR2G 3 datasets
ChIP K562 ENCFF047BLG 253 bp overlap
ChIP K562 ENCFF648YPL 253 bp overlap
ChIP K562 ENCFF648YPL 185 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 253 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 253 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 84 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 208 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 107 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 253 bp overlap
PRPF4 2 datasets
ChIP K-562 ENCSR220YXI.PRPF4.K-562 176 bp overlap
ChIP K-562 GSE120104.PRPF4.K-562 157 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 232 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 246 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 220 bp overlap
ChIP K562 ENCFF967GRF 253 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 253 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 253 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 64 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 119 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 198 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 253 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 253 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 253 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 253 bp overlap
SAFB 1 dataset
ChIP K562 ENCFF916WYW 253 bp overlap
SETDB1 1 dataset
ChIP K-562 ENCSR000EWI.SETDB1.K-562 118 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 75 bp overlap
SMARCA4 1 dataset
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 253 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 253 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 155 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 253 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 253 bp overlap
SRSF4 1 dataset
ChIP K-562 GSE120104.SRSF4.K-562 174 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 253 bp overlap
TAL1 2 datasets
ChIP ME-1 GSE46044.TAL1.ME-1 251 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 139 bp overlap
TARDBP 1 dataset
ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 223 bp overlap
TCF7 2 datasets
ChIP breast-organoid_BRCA1-mut GSE113909.TCF7.breast-organoid_BRCA1-mut 253 bp overlap
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 253 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 141 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 253 bp overlap
TRIM28 2 datasets
ChIP HCT-116 GSE72622.TRIM28.HCT-116 249 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 253 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 253 bp overlap
ChIP K562 ENCFF427SDV 253 bp overlap
ChIP K562 ENCFF875HLX 253 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 245 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 253 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 64 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 130 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF524 1 dataset
Motif DE_12h DE_12h-ZNF524_MA2096.1 9 bp overlap
ZNF558 1 dataset
ChIP HEK293T GSE78099.ZNF558.HEK293T 241 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
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