chr9 : 16,729,761 – 16,730,743
982 bp 99 TFs 1 linked gene
This 982 bp open chromatin element is linked to BNC2-AS1 and is bound by 99 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BNC2-AS1 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:16,724,761 – 16,735,743
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 288 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 562 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 95 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 318 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 352 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 274 bp overlap
BRD4 2 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 188 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 513 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 136 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 151 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 151 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 153 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 195 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF460KDD 797 bp overlap
ChIP BLaER1 ENCFF680YXW 251 bp overlap
ChIP BLaER1 ENCFF896HSY 333 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 414 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 234 bp overlap
EP300 1 dataset
ChIP upper lobe of left lung ENCFF024QBJ 201 bp overlap
EZH2 4 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 289 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 315 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 382 bp overlap
ChIP neural progenitor cell ENCFF018MKA 361 bp overlap
EZH2_phosphoT487 2 datasets
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 294 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 455 bp overlap
FEZF1 4 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 190 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 122 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 236 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 173 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 68 bp overlap
FOXA1 3 datasets
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 221 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 163 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 211 bp overlap
FOXA2 7 datasets
ChIP DE DE-FOXA2-1 663 bp overlap
ChIP DE DE-FOXA2-2 331 bp overlap
ChIP DE DE-FOXA2-2 492 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 127 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 238 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 195 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 299 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 553 bp overlap
ChIP DE DE-GATA4-2 814 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 486 bp overlap
ChIP DE DE-GATA6-2 774 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 498 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 598 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 679 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 568 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 717 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 674 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 534 bp overlap
HOXB4 2 datasets
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 143 bp overlap
HOXC4 2 datasets
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD3 2 datasets
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
HSF1 1 dataset
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
Hic1 1 dataset
Motif DE_60h DE_60h-Hic1_MA0739.2 8 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 296 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 357 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 276 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 118 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 143 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 213 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 144 bp overlap
MAX 2 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 157 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 196 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 142 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 637 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 705 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 126 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 234 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 525 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 287 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 203 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 733 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 457 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 405 bp overlap
ChIP hESC GSE20650.NANOG.hESC 213 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 144 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 982 bp overlap
ONECUT1 3 datasets
ChIP H9 ERP004206.ONECUT1.H9 535 bp overlap
ChIP liver ERP002306.ONECUT1.liver 150 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 596 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 733 bp overlap
PAX4 1 dataset
Motif DE_60h DE_60h-PAX4_MA0068.2 8 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 240 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
PGR 1 dataset
Motif DE_60h DE_60h-PGR_MA2327.1 9 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 325 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 61 bp overlap
POLR2A 4 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 382 bp overlap
ChIP neural cell ENCFF604SPB 329 bp overlap
ChIP ovary ENCFF425PQK 276 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 149 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 837 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 456 bp overlap
POU6F1 2 datasets
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 405 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 61 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 287 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 294 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 228 bp overlap
RELA 5 datasets
ChIP 786-O GSE86092.RELA.786-O 103 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 106 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 60 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 93 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 178 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 112 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 177 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 204 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 111 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 607 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 559 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 532 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 563 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 451 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 546 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 546 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 96 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 63 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 631 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 412 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 761 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 200 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 586 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 397 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 259 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 300 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 398 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX14 1 dataset
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 374 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 358 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 307 bp overlap
SOX21 2 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SPI1 2 datasets
ChIP OCI-Ly3_SHCTR GSE56857.SPI1.OCI-Ly3_SHCTR 191 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 178 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 323 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 146 bp overlap
Sox1 2 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 370 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 188 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 180 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 137 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 425 bp overlap
ZIC1 1 dataset
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
ZNF304 1 dataset
ChIP HEK293T GSE78099.ZNF304.HEK293T 128 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 239 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 218 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 243 bp overlap
Zic1::Zic2 1 dataset
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
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