chr1 : 167,328,342 – 167,328,714

372 bp 109 TFs 0 linked genes

This 372 bp open chromatin element has no linked target genes and is bound by 109 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

109 transcription factors

ARID3A 1 dataset

ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 56 bp overlap

ASCL1 1 dataset

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 199 bp overlap

ASH2L 1 dataset

ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 295 bp overlap

BARX1 1 dataset

Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap

BARX2 1 dataset

Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap

BORCS8-MEF2B,MEF2B 1 dataset

ChIP GM12878 ENCFF427QAI 57 bp overlap

BRD4 11 datasets

ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 194 bp overlap

ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 293 bp overlap

ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 109 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 291 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 73 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 290 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 231 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 151 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 372 bp overlap

ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 299 bp overlap

ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 110 bp overlap

BSX 1 dataset

Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap

CDK8 1 dataset

ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 66 bp overlap

CDK9 1 dataset

ChIP P493-6_CMYC_1H GSE36354.CDK9.P493-6_CMYC_1H 105 bp overlap

CHD4 1 dataset

ChIP macrophage GSE136216.CHD4.macrophage 70 bp overlap

CREBBP 1 dataset

ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 341 bp overlap

CRX 4 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 323 bp overlap

ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 323 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 357 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 372 bp overlap

CTCF 5 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap

ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 167 bp overlap

ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 257 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 339 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 327 bp overlap

Crx 1 dataset

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

DLX1 1 dataset

Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap

DPF2 2 datasets

ChIP GM12878 ENCFF681AJV 65 bp overlap

ChIP GM12878 ENCSR509FWH.DPF2.GM12878 156 bp overlap

DPRX 1 dataset

Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap

Dlx2 1 dataset

Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap

EBF3 1 dataset

Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 339 bp overlap

ERF::HOXB13 1 dataset

Motif DE_48h DE_48h-ERFHOXB13_MA1937.2 13 bp overlap

ETV2::DRGX 1 dataset

Motif DE_48h DE_48h-ETV2DRGX_MA1940.2 12 bp overlap

ETV5::DRGX 1 dataset

Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap

ETV5::HOXA2 1 dataset

Motif DE_48h DE_48h-ETV5HOXA2_MA1948.2 12 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 372 bp overlap

Ebf2 1 dataset

Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap

FLI1::DRGX 1 dataset

Motif DE_48h DE_48h-FLI1DRGX_MA1949.2 14 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 372 bp overlap

ChIP DE DE-FOXA2-2 341 bp overlap

FOXD3 1 dataset

Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap

FOXP1 2 datasets

ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 274 bp overlap

ChIP U2932 ERP010999.FOXP1.U2932 232 bp overlap

GATA2 1 dataset

ChIP TF1 GSE73207.GATA2.TF1 200 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 372 bp overlap

ChIP DE DE-GATA4-2 372 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 372 bp overlap

ChIP DE DE-GATA6-2 372 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 372 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 364 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 372 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 221 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 372 bp overlap

GBX2 1 dataset

Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap

GSC 1 dataset

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

HDAC1 1 dataset

ChIP NB4 GSE126720.HDAC1.NB4 120 bp overlap

HESX1 1 dataset

Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap

IKZF1 1 dataset

ChIP GM12878 ENCFF824TGK 91 bp overlap

IKZF2 2 datasets

ChIP GM12878 ENCFF238LYK 372 bp overlap

ChIP GM12878 ENCFF238LYK 71 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 135 bp overlap

KDM1A 1 dataset

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 74 bp overlap

KLF9 1 dataset

ChIP GBM1A GSE62211.KLF9.GBM1A 65 bp overlap

KMT2A 3 datasets

ChIP MV4-11 GSE83671.KMT2A.MV4-11 181 bp overlap

ChIP MV4-11 GSE79899.KMT2A.MV4-11 151 bp overlap

ChIP SEM GSE83671.KMT2A.SEM 327 bp overlap

LBX2 1 dataset

Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap

MED1 1 dataset

ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 80 bp overlap

MEF2D 3 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 308 bp overlap

ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 273 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 351 bp overlap

MEN1 1 dataset

ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 228 bp overlap

MLLT1 2 datasets

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 207 bp overlap

ChIP MOLM-13 GSE82116.MLLT1.MOLM-13 366 bp overlap

MSX1 1 dataset

Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap

MTA2 1 dataset

ChIP GM12878 ENCSR293QAR.MTA2.GM12878 301 bp overlap

MXI1 1 dataset

ChIP GM12878 ENCFF666NJR 119 bp overlap

Msx3 1 dataset

Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap

NANOG 1 dataset

ChIP WA09 GSE105028.NANOG.WA09 104 bp overlap

NEUROD1 5 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 348 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 331 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 308 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 249 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 360 bp overlap

NFATC1 1 dataset

ChIP GM12878 ENCFF023CAZ 55 bp overlap

NFIC 1 dataset

ChIP GM12878 ENCFF259FWL 62 bp overlap

NR2F1 1 dataset

ChIP GM12878 ENCFF273VKX 51 bp overlap

NRL 1 dataset

ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 349 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 372 bp overlap

Nobox 1 dataset

Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap

OTX1 1 dataset

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 372 bp overlap

PITX1 1 dataset

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

PKNOX1 1 dataset

ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 162 bp overlap

PML 1 dataset

ChIP GM12878 ENCFF160JQZ 323 bp overlap

POU2AF1 1 dataset

ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 93 bp overlap

POU2F1 2 datasets

ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 208 bp overlap

ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 200 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 114 bp overlap

POU3F1 1 dataset

ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 80 bp overlap

POU5F1 2 datasets

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 192 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 140 bp overlap

Prdm5 1 dataset

Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 321 bp overlap

RAX 1 dataset

Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap

RBPJ 1 dataset

ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 156 bp overlap

RELB 1 dataset

ChIP GM12878 ENCSR387QUV.RELB.GM12878 372 bp overlap

RHOXF1 1 dataset

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 372 bp overlap

RUNX1 1 dataset

ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 324 bp overlap

SIN3A 1 dataset

ChIP GM12878 ENCFF238GUI 208 bp overlap

SKIL 1 dataset

ChIP GM12878 ENCSR212YKD.SKIL.GM12878 293 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 372 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 333 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 299 bp overlap

SMARCA4 1 dataset

ChIP NSC GSE125033.SMARCA4.NSC 185 bp overlap

SMARCC1 1 dataset

ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 232 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 287 bp overlap

SOX18 1 dataset

Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 52 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 105 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP H1 ENCFF263FUH 153 bp overlap

SRY 1 dataset

Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 259 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 372 bp overlap

TBX21 1 dataset

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 326 bp overlap

TCF3 1 dataset

ChIP Ramos GSE139810.TCF3.Ramos 228 bp overlap

TP53 1 dataset

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 109 bp overlap

TRIM22 1 dataset

ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 352 bp overlap

VENTX 1 dataset

Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap

YY1 1 dataset

ChIP GM12878 ENCFF908JTL 294 bp overlap

ZNF217 1 dataset

ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 169 bp overlap