chr7 : 148,976,008 148,976,320
312 bp 66 TFs 1 linked gene
This 312 bp open chromatin element is linked to RNY3 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RNY3 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:148,971,008 – 148,981,320
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 164 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 217 bp overlap
ChIP K562 ENCFF674KTF 147 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 219 bp overlap
ChIP K562 ENCFF308SKS 312 bp overlap
BCL6 2 datasets
ChIP HepG2 ENCFF423EJH 189 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 255 bp overlap
BRD2 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD2.MV4-11_DMSO 110 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 206 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 202 bp overlap
CDK9 1 dataset
ChIP MM1-S_DMSO GSE42355.CDK9.MM1-S_DMSO 172 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 124 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF651CMK 272 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 61 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 268 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 173 bp overlap
DDX21 1 dataset
ChIP A-375 GSE128080.DDX21.A-375 110 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 171 bp overlap
ChIP K562 ENCFF622HMZ 155 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 94 bp overlap
GABPA 2 datasets
ChIP Hep-G2 ENCSR269TNX.GABPA.Hep-G2 83 bp overlap
ChIP HepG2 ENCFF180FFY 248 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
HCFC1 7 datasets
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 129 bp overlap
ChIP Hep-G2 ENCSR529JYA.HCFC1.Hep-G2 185 bp overlap
ChIP HepG2 ENCFF806CDY 200 bp overlap
ChIP K-562 ENCSR000EFN.HCFC1.K-562 213 bp overlap
ChIP K562 ENCFF959WVM 122 bp overlap
ChIP MCF-7 ENCFF595ZTV 267 bp overlap
ChIP MCF-7 ENCSR697CUP.HCFC1.MCF-7 210 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 199 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 181 bp overlap
KLF10 2 datasets
ChIP Hep-G2 GSE97661.KLF10.Hep-G2 242 bp overlap
ChIP MCF-7 GSE97661.KLF10.MCF-7 93 bp overlap
MAZ 5 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 175 bp overlap
ChIP Hep-G2 ENCSR000EDN.MAZ.Hep-G2 130 bp overlap
ChIP K-562 ENCSR163IUV.MAZ.K-562 154 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 143 bp overlap
ChIP K562 ENCFF809XHP 312 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 172 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 127 bp overlap
NR2C1 2 datasets
ChIP K-562 ENCSR178DEG.NR2C1.K-562 162 bp overlap
ChIP K562 ENCFF568JLK 251 bp overlap
NR2C2 3 datasets
ChIP HepG2 ENCFF944PRH 312 bp overlap
ChIP K-562 ENCSR750LYM.NR2C2.K-562 166 bp overlap
ChIP K562 ENCFF750AXF 312 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 185 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 118 bp overlap
PKNOX1 7 datasets
ChIP GM12878 ENCFF589FCY 99 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 127 bp overlap
ChIP HEK293T ENCFF174WDB 144 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 93 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 134 bp overlap
ChIP K562 ENCFF236IUS 82 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 110 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 84 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 205 bp overlap
RAD21 2 datasets
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 150 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 128 bp overlap
RBM39 1 dataset
ChIP K-562 GSE120104.RBM39.K-562 219 bp overlap
REST 20 datasets
ChIP GM12878 ENCSR000BQS.REST.GM12878 72 bp overlap
ChIP H1 ENCFF429RUE 56 bp overlap
ChIP HEK293 ENCFF073DOT 190 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 157 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 64 bp overlap
ChIP HeLa-S3 ENCFF911DTC 136 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 98 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 115 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 160 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 125 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 115 bp overlap
ChIP K562 ENCFF688UKW 195 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 75 bp overlap
ChIP SK-N-SH ENCFF635KBN 149 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 111 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 203 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 244 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 86 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 217 bp overlap
ChIP liver ENCSR893QWP.REST.liver 109 bp overlap
RFX1 2 datasets
ChIP MCF-7 ENCFF782EZS 180 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 144 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 209 bp overlap
SIX5 7 datasets
ChIP GM12878 ENCFF766FEJ 132 bp overlap
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 142 bp overlap
ChIP H1 ENCFF942SOJ 130 bp overlap
ChIP K-562 ENCSR000BGX.SIX5.K-562 98 bp overlap
ChIP K-562 ENCSR000BNW.SIX5.K-562 112 bp overlap
ChIP K562 ENCFF472MWE 174 bp overlap
ChIP K562 ENCFF637NIL 163 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 74 bp overlap
ChIP HeLa-Kyoto_WT GSE138405.SMC3.HeLa-Kyoto_WT 163 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 100 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 269 bp overlap
SUZ12 3 datasets
ChIP Hep-G2 ENCSR771GTF.SUZ12.Hep-G2 143 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 120 bp overlap
ChIP K562 ENCFF944TWT 169 bp overlap
TBP 1 dataset
ChIP hESC_10h GSE122298.TBP.hESC_10h 160 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 166 bp overlap
ChIP K562 ENCFF727PXG 312 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 242 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 93 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 239 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 137 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 138 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 135 bp overlap
YY1 2 datasets
ChIP K562 ENCFF660QRE 100 bp overlap
ChIP K562 ENCFF660QRE 300 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 312 bp overlap
ChIP HEK293 ENCFF865LIO 312 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 57 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 214 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 312 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 243 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 193 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 190 bp overlap
ZNF143 21 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 167 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 162 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 80 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 217 bp overlap
ChIP GM12878 ENCSR000DZL.ZNF143.GM12878 64 bp overlap
ChIP HEK293T GSE39263.ZNF143.HEK293T 198 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 207 bp overlap
ChIP HeLa-S3 ENCSR000ECO.ZNF143.HeLa-S3 122 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 289 bp overlap
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 224 bp overlap
ChIP HepG2 ENCFF658YIR 168 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 142 bp overlap
ChIP K-562 GSE39263.ZNF143.K-562 189 bp overlap
ChIP K562 ENCFF554TVF 127 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 312 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 275 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 186 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 246 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 210 bp overlap
ChIP WTC11 ENCFF249JUK 303 bp overlap
ChIP WTC11 ENCFF249JUK 295 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 312 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 294 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 125 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 117 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 178 bp overlap