chr6 : 143,675,280 – 143,675,877
597 bp 93 TFs 1 linked gene
This 597 bp open chromatin element is linked to PHACTR2 and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PHACTR2 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:143,670,280 – 143,680,877
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 87 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 141 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 225 bp overlap
ATF4 1 dataset
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
BRD4 8 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 388 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 521 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 395 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 306 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 62 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 77 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 206 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 73 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 174 bp overlap
CREB1 1 dataset
Motif DE_36h DE_36h-CREB1_MA0018.5 8 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 176 bp overlap
CTCFL 1 dataset
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 406 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 449 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA1 6 datasets
Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap
ChIP HepG2 ENCFF207NVJ 137 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 270 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 317 bp overlap
FOXA2 9 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 132 bp overlap
ChIP DE DE-FOXA2-1 597 bp overlap
ChIP DE DE-FOXA2-2 597 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 176 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 366 bp overlap
FOXA3 2 datasets
Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap
Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap
FOXC2 1 dataset
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_36h DE_36h-FOXD1_MA0031.2 7 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 276 bp overlap
FOXF2 1 dataset
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
FOXI1 2 datasets
Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap
Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap
FOXK1 2 datasets
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 206 bp overlap
FOXK2 1 dataset
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP1 5 datasets
Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap
Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 173 bp overlap
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 259 bp overlap
ChIP HepG2 ENCFF823ERM 341 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
FOXP4 3 datasets
Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap
Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 234 bp overlap
FOXS1 2 datasets
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Foxl2 2 datasets
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 597 bp overlap
ChIP DE DE-GATA4-2 597 bp overlap
ChIP foregut GSE117136.GATA4.foregut 511 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 597 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 597 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 597 bp overlap
ChIP DE DE-GATA6-2 597 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 584 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 524 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 386 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 597 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 577 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 597 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 236 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 511 bp overlap
ChIP foregut GSE117136.GATA6.foregut 492 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 314 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 319 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 362 bp overlap
GRHL1 1 dataset
Motif DE_48h DE_48h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_48h DE_48h-GRHL2_MA1105.3 8 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 117 bp overlap
HNF1A 3 datasets
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 244 bp overlap
ChIP HepG2 ENCFF352VYI 411 bp overlap
HNF1B 4 datasets
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 229 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 371 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 555 bp overlap
HNF4A 1 dataset
ChIP GP5D GSE51234.HNF4A.GP5D 57 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 262 bp overlap
Hmx2 1 dataset
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 178 bp overlap
JUN 2 datasets
ChIP BT-549 GSE46166.JUN.BT-549 93 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 579 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 139 bp overlap
MAZ 1 dataset
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 481 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 415 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 458 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 338 bp overlap
ChIP hESC GSE18292.NANOG.hESC 166 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 337 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
PATZ1 2 datasets
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
ChIP HepG2 ENCFF723PFC 190 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 125 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU5F1 3 datasets
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 406 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 385 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 343 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 300 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 250 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 266 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 597 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 509 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 511 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 300 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 470 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 278 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 534 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 548 bp overlap
SMAD3 2 datasets
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 122 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 195 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 193 bp overlap
SMARCA4 7 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 88 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 155 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 224 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 291 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 316 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 303 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 475 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 207 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 393 bp overlap
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 71 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 533 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 210 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 383 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 356 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 472 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 180 bp overlap
SOX4 1 dataset
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 330 bp overlap
Sox11 1 dataset
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 448 bp overlap
TFCP2 1 dataset
Motif DE_48h DE_48h-TFCP2_MA1968.2 9 bp overlap
Tfcp2l1 1 dataset
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
ZNF148 1 dataset
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 336 bp overlap
ZNF449 1 dataset
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF558 1 dataset
ChIP HepG2 ENCFF210VCS 549 bp overlap
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