chr6 : 131,917,507 – 131,917,739
232 bp 76 TFs 1 linked gene
This 232 bp open chromatin element is linked to LINC01013 and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01013 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:131,912,507 – 131,922,739
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 164 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 232 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 227 bp overlap
BRD4 15 datasets
ChIP MM1-S GSE43743.BRD4.MM1-S 52 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 166 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 104 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 117 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 210 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 232 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 232 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 232 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 170 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 94 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 61 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 131 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 161 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 148 bp overlap
ChIP SEM GSE83671.BRD4.SEM 201 bp overlap
CASZ1 4 datasets
ChIP rhabdomyosarcoma GSE126143.CASZ1.rhabdomyosarcoma 221 bp overlap
ChIP rhabdomyosarcoma_Ctrl GSE126142.CASZ1.rhabdomyosarcoma_Ctrl 207 bp overlap
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 191 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 135 bp overlap
CDK8 2 datasets
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 85 bp overlap
ChIP SET-2 GSE65138.CDK8.SET-2 84 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 105 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 189 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 232 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 178 bp overlap
CEBPA 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 79 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 232 bp overlap
CTCF 2 datasets
ChIP Loucy ENCSR464DKE.CTCF.Loucy 135 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 232 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 87 bp overlap
ChIP BLaER1 ENCFF274GAT 230 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 232 bp overlap
EP300 2 datasets
ChIP 697 GSE138031.EP300.697 134 bp overlap
ChIP AML GSE131939.EP300.AML 70 bp overlap
ERG 5 datasets
ChIP ME-1 GSE46044.ERG.ME-1 117 bp overlap
ChIP SEM GSE117864.ERG.SEM 201 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 118 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 123 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 98 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 95 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 112 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 232 bp overlap
EVI1 2 datasets
ChIP SKH1 GSE87283.EVI1.SKH1 130 bp overlap
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 94 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 145 bp overlap
FLI1 4 datasets
ChIP SEM GSE117864.FLI1.SEM 232 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 132 bp overlap
ChIP UAE GSE23730.FLI1.UAE 92 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 112 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 232 bp overlap
GATA1 1 dataset
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 64 bp overlap
GATA2 5 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 98 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 118 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 52 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 155 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 59 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 70 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 171 bp overlap
GFI1B 1 dataset
ChIP SET-2 GSE121424.GFI1B.SET-2 53 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 232 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 232 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 232 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 232 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 69 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 76 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 64 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 118 bp overlap
KDM1A 3 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 188 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 92 bp overlap
ChIP SKNO-1_DMSO GSE71739.KDM1A.SKNO-1_DMSO 232 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 232 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 232 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 105 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 128 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 55 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 120 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAX 3 datasets
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 71 bp overlap
ChIP WTC11 ENCFF223QFY 232 bp overlap
ChIP WTC11 ENCFF223QFY 230 bp overlap
MECOM 1 dataset
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 52 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 232 bp overlap
MED1 5 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 232 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 203 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 177 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 232 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 154 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 166 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 88 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 232 bp overlap
MYB 5 datasets
ChIP DU528 GSE94000.MYB.DU528 232 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 129 bp overlap
ChIP SEM GSE117864.MYB.SEM 232 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 114 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 215 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 89 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 232 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 142 bp overlap
NR3C1 2 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 115 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 232 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE115764.PAX5.NALM-6 232 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 232 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 232 bp overlap
PBX1-2-3 1 dataset
ChIP 697 GSE138031.PBX1-2-3.697 128 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 232 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 232 bp overlap
RCOR1 1 dataset
ChIP AML_OG86 GSE112074.RCOR1.AML_OG86 87 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 130 bp overlap
RUNX1 22 datasets
ChIP 697 GSE138031.RUNX1.697 232 bp overlap
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 107 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 232 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 107 bp overlap
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 105 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 136 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 134 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 76 bp overlap
ChIP Kasumi-1 GSE65427.RUNX1.Kasumi-1 76 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 105 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 122 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 114 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 114 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 122 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 133 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 232 bp overlap
ChIP NALM-6 GSE109377.RUNX1.NALM-6 76 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 76 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 70 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 143 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 112 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 95 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 81 bp overlap
RUNX2 2 datasets
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 216 bp overlap
ChIP PER-117 GSE151819.RUNX2.PER-117 94 bp overlap
SIRT6 1 dataset
ChIP WA01 ENCSR000AUS.SIRT6.WA01 139 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 232 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 148 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 58 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 94 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 57 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 51 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 98 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 72 bp overlap
TAL1 3 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 193 bp overlap
ChIP ME-1 GSE46044.TAL1.ME-1 100 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 121 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 146 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 103 bp overlap
TCF3 3 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 91 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 232 bp overlap
ChIP SEM GSE85988.TCF3.SEM 125 bp overlap
TCF3-PBX1 1 dataset
ChIP 697_HF GSE138031.TCF3-PBX1.697_HF 141 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 204 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 118 bp overlap
TCF7 1 dataset
Motif ES_0h ES_0h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 50 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 78 bp overlap
ZBTB17 1 dataset
ChIP K562 ENCFF731UTU 232 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 232 bp overlap
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