chr5 : 65,158,001 65,158,465
464 bp 92 TFs 0 linked genes
This 464 bp open chromatin element has no linked target genes and is bound by 92 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:65,153,001 – 65,163,465
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
ARNTL 7 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 464 bp overlap
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 200 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 464 bp overlap
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 251 bp overlap
ChIP U2OS_cordycepin GSE130506.ARNTL.U2OS_cordycepin 464 bp overlap
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 232 bp overlap
ChIP U2OS_trough_DMSO GSE85096.ARNTL.U2OS_trough_DMSO 239 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BRD4 12 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 464 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 464 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 263 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 128 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 251 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 251 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 207 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 373 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 193 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 435 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 449 bp overlap
BRD9 1 dataset
ChIP HeLa-S3 GSE129437.BRD9.HeLa-S3 128 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 241 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 262 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 142 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 464 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 364 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 216 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 382 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 455 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 449 bp overlap
ChIP PC-3 GSE147455.EP300.PC-3 121 bp overlap
ESR1 35 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 292 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 464 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 464 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 464 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 464 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 464 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 464 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 464 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 459 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 303 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 464 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 310 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 67 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 464 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 464 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 464 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 464 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 464 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 464 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 464 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 464 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 464 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 464 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 464 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 464 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 464 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 464 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 446 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 464 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 464 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 464 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 464 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 191 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 86 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 306 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 434 bp overlap
FOSL2 1 dataset
ChIP LPS141 GSE111253.FOSL2.LPS141 140 bp overlap
FOXA1 7 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 444 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 412 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 464 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 183 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 464 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 333 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 464 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 403 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 464 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 384 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 392 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCFF578VDD 258 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 309 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 395 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 346 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 346 bp overlap
GCM2 1 dataset
Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 131 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 464 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 84 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 306 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 176 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 464 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 282 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 428 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 394 bp overlap
KLF4 2 datasets
ChIP PDAC GSE64557.KLF4.PDAC 464 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 165 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 464 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 180 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 464 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 158 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 137 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 116 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 407 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 444 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
NR3C1 8 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 157 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 169 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.NR3C1.Ishikawa_Dex_E2 135 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 97 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 73 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 255 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 464 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 337 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 168 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 284 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 187 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 174 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RAD21 1 dataset
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 175 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 184 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 464 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 396 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 464 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 464 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 437 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 99 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 166 bp overlap
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 135 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 464 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 464 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 447 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 464 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 464 bp overlap
SMAD3 5 datasets
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 464 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 294 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 447 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 464 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 198 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 275 bp overlap
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 213 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 125 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 141 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 230 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 127 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 127 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 98 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 184 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 276 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 368 bp overlap
STAT3 2 datasets
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 148 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 195 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 141 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 179 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 209 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 199 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 305 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 11 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP HCT-116 ENCSR000BVJ.TEAD4.HCT-116 112 bp overlap
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 225 bp overlap
ChIP Ishikawa ENCFF772OTG 289 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 179 bp overlap
ChIP MKN28 GSE44416.TEAD4.MKN28 252 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 217 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 297 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 274 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 136 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 240 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 263 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 179 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 449 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 249 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 204 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 362 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 396 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 325 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 464 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 71 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 173 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap