chr1 : 90,726,697 – 90,727,512
815 bp 71 TFs 1 linked gene
This 815 bp open chromatin element is linked to ENSG00000287076 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287076 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:90,721,697 – 90,732,512
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 215 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 204 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 161 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 690 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 229 bp overlap
BRD4 5 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 359 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 292 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 661 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 329 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 227 bp overlap
CBX7 2 datasets
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 256 bp overlap
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 411 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 190 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 792 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 250 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 677 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 744 bp overlap
ERG 1 dataset
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 221 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 272 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 434 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
EZH2 26 datasets
ChIP B cell ENCFF803EMO 127 bp overlap
ChIP B cell ENCFF803EMO 401 bp overlap
ChIP GM23248 ENCFF404ZHM 198 bp overlap
ChIP GM23338 ENCFF613YON 815 bp overlap
ChIP GM23338 ENCFF886DXX 712 bp overlap
ChIP H1 ENCFF232NZA 815 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 572 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 254 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 698 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 688 bp overlap
ChIP astrocyte ENCFF365JTP 409 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 100 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 583 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 583 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 511 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 784 bp overlap
ChIP hESC GSE113817.EZH2.hESC 558 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 183 bp overlap
ChIP hepatocyte ENCFF552DZB 815 bp overlap
ChIP myotube ENCFF857GWB 352 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 815 bp overlap
ChIP neural progenitor cell ENCFF472NFV 815 bp overlap
ChIP neural progenitor cell ENCFF472NFV 815 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 456 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 318 bp overlap
FOXA1 6 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 163 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 91 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 297 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 460 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 93 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 114 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 377 bp overlap
ChIP DE DE-FOXA2-1 133 bp overlap
ChIP DE DE-FOXA2-2 60 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 115 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 57 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 88 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 315 bp overlap
ChIP WTC11 ENCFF875IGU 391 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 532 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 257 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 185 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 371 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 230 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 228 bp overlap
HNRNPLL 1 dataset
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 217 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 57 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 153 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 162 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 751 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 543 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 147 bp overlap
JUN 2 datasets
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 317 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 216 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 451 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 328 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF743ZOF 241 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 179 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 231 bp overlap
NFIC::TLX1 1 dataset
Motif ES_0h ES_0h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 565 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 456 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 387 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 527 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 195 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 723 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 144 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 461 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 504 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 554 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 79 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 291 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 345 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 815 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 261 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 403 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 272 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 207 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 271 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 302 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 431 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 373 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 384 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 563 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 395 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 317 bp overlap
SS18 3 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 279 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 637 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 406 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 285 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 245 bp overlap
SUZ12 11 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 786 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 815 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 378 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 588 bp overlap
ChIP NT2/D1 ENCFF574SXS 406 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 195 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 63 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 308 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 187 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 815 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 815 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 400 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 221 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 91 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 235 bp overlap
ZBTB24 2 datasets
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 289 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 234 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
Huangfu Lab · Publications · Resources · Contact