chr5 : 38,707,389 38,708,007
618 bp 86 TFs 0 linked genes
This 618 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:38,702,389 – 38,713,007
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 165 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 618 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 259 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 440 bp overlap
BRD4 7 datasets
ChIP BE2C GSE80151.BRD4.BE2C 444 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 212 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 142 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 234 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 444 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 618 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 529 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 81 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 184 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 390 bp overlap
CEBPA 1 dataset
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 200 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000EHE.CEBPB.K-562 156 bp overlap
CEBPG 3 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 327 bp overlap
ChIP K-562 ENCSR620VIC.CEBPG.K-562 303 bp overlap
ChIP K562 ENCFF956TPS 511 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 124 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 202 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 215 bp overlap
CTCF 6 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 279 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 190 bp overlap
ChIP adrenal gland ENCFF596QXB 166 bp overlap
ChIP adrenal gland ENCFF678WUB 152 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 356 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 155 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 510 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 424 bp overlap
ESR1 7 datasets
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 58 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 232 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 58 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 232 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 195 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 195 bp overlap
ChIP T-47D ENCSR000BJS.ESR1.T-47D 99 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 176 bp overlap
EZH2 2 datasets
ChIP THP-1 GSE135024.EZH2.THP-1 108 bp overlap
ChIP hepatocyte ENCFF118DKH 113 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 247 bp overlap
FOXA1 5 datasets
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 78 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 59 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 53 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 301 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 199 bp overlap
FOXA2 6 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 240 bp overlap
ChIP DE DE-FOXA2-1 559 bp overlap
ChIP DE DE-FOXA2-2 480 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 212 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 276 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 227 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 438 bp overlap
GATA1 7 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 211 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 188 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 192 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 201 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 215 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 210 bp overlap
GATA2 16 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 432 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 144 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 144 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 203 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 162 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 618 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCFF764OZD 381 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 573 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 497 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 261 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 252 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 241 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 266 bp overlap
GATA3 7 datasets
ChIP Kelly GSE65664.GATA3.Kelly 174 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 170 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 255 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 230 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 217 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 538 bp overlap
ChIP SK-N-SH ENCFF040SSB 325 bp overlap
GATA4 7 datasets
ChIP A-549 GSE85002.GATA4.A-549 208 bp overlap
ChIP DE DE-GATA4-1 603 bp overlap
ChIP DE DE-GATA4-2 618 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 564 bp overlap
ChIP foregut GSE117136.GATA4.foregut 542 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 618 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 618 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 576 bp overlap
ChIP AGS GSE51936.GATA6.AGS 151 bp overlap
ChIP AGS GSE51936.GATA6.AGS 159 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 547 bp overlap
ChIP DE DE-GATA6-1 567 bp overlap
ChIP DE DE-GATA6-2 618 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 618 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 618 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 618 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 618 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 618 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 618 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 258 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 618 bp overlap
ChIP foregut GSE117136.GATA6.foregut 539 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 618 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 618 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 561 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 562 bp overlap
GFI1B 1 dataset
ChIP K-562_Wnt GSE117944.GFI1B.K-562_Wnt 206 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 567 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 274 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 578 bp overlap
ChIP SK-N-SH ENCFF285GEQ 122 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 272 bp overlap
KDM1A 5 datasets
ChIP K-562 GSE117944.KDM1A.K-562 618 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 618 bp overlap
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 177 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 307 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 347 bp overlap
KLF13 1 dataset
ChIP K-562 ENCSR608HVP.KLF13.K-562 322 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 561 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 581 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 376 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 313 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 467 bp overlap
MYCN 5 datasets
ChIP BE2C GSE80151.MYCN.BE2C 448 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 208 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 147 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 573 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 448 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 69 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 121 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 378 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 156 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 438 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 272 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 393 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 120 bp overlap
PPARA 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 82 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 309 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 255 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 278 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 561 bp overlap
RELA 1 dataset
ChIP KB_IL GSE52469.RELA.KB_IL 75 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 618 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 618 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 422 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 339 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 491 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 590 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 553 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 157 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 155 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 258 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 618 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 265 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAL1 5 datasets
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 142 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 191 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 199 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 237 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 204 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 98 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 376 bp overlap
ChIP SK-N-SH ENCFF147AHB 308 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 159 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 407 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 143 bp overlap
TEAD4 2 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 355 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 105 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 158 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 444 bp overlap
TP63 1 dataset
ChIP BxPC-3 GSE115461.TP63.BxPC-3 189 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 559 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 215 bp overlap
ChIP BE2C GSE80151.TWIST1.BE2C 154 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 215 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 154 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 299 bp overlap
ZNF429 1 dataset
ChIP HEK293T GSE78099.ZNF429.HEK293T 117 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 298 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 91 bp overlap
ZNF549 4 datasets
ChIP HEK293 ENCFF528IUI 337 bp overlap
ChIP HEK293 ENCFF565EYY 337 bp overlap
ChIP HEK293 GSE76494.ZNF549.HEK293 268 bp overlap
ChIP HEK293 ENCSR185QFX.ZNF549.HEK293 280 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 101 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 394 bp overlap