chr5 : 2,754,602 – 2,754,998
396 bp 68 TFs 3 linked genes
This 396 bp open chromatin element is linked to ENSG00000289075, IRX2-DT, and IRX2 and is bound by 68 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289075 1.5 kb Proximal Proximity
IRX2-DT 2.5 kb Proximal Proximity
IRX2 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:2,749,602 – 2,759,998
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 396 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 320 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 224 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 113 bp overlap
BACH1 3 datasets
ChIP H1 ENCFF282VDB 216 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 197 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 52 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 287 bp overlap
BRD4 4 datasets
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 105 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 257 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 211 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 396 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 226 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 164 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 159 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 243 bp overlap
CTCF 11 datasets
ChIP SUM159 GSE46055.CTCF.SUM159 156 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 396 bp overlap
ChIP brain ENCFF099ASU 88 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 90 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 101 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 349 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 396 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 252 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 383 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 197 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 57 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 226 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 349 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 235 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 127 bp overlap
ESR1 16 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 224 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 199 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 198 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 280 bp overlap
ChIP MCF-7_Veh GSE117941.ESR1.MCF-7_Veh 224 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 159 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 293 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 223 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 267 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 394 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 396 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 354 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 396 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 133 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 108 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 287 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 216 bp overlap
EZH2 15 datasets
ChIP A673 ENCFF790MVL 77 bp overlap
ChIP GM23338 ENCFF613YON 187 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 396 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 396 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 396 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 396 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 396 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 290 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 370 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 178 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 396 bp overlap
ChIP neural cell ENCFF610EPB 317 bp overlap
ChIP neural progenitor cell ENCFF018MKA 175 bp overlap
ChIP neural progenitor cell ENCFF018MKA 265 bp overlap
ChIP neural progenitor cell ENCFF472NFV 396 bp overlap
EZH2_phosphoT487 2 datasets
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 219 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 87 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 316 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 128 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 396 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 395 bp overlap
ChIP H1 ENCFF353UJQ 245 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 163 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 190 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 91 bp overlap
HOXB13 1 dataset
ChIP LNCaP GSE56288.HOXB13.LNCaP 141 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 280 bp overlap
JARID2 1 dataset
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 139 bp overlap
JUN 1 dataset
ChIP ESC S24-ESC-d0-JUN-exp1 396 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 124 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 247 bp overlap
KDM5B 3 datasets
ChIP SUM159 GSE46055.KDM5B.SUM159 396 bp overlap
ChIP SUM185 GSE46055.KDM5B.SUM185 170 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 330 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 248 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 328 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 249 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 396 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 210 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 213 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 355 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 124 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 59 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 78 bp overlap
NR3C1 5 datasets
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 396 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 396 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 374 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 396 bp overlap
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 233 bp overlap
ONECUT1 1 dataset
ChIP H9 ERP004206.ONECUT1.H9 56 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 283 bp overlap
POLR2A 1 dataset
ChIP upper lobe of left lung ENCFF640VPA 141 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 232 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 396 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 360 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 396 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 253 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 375 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 170 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 170 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 213 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 121 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 344 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 214 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 269 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 126 bp overlap
RNF2 4 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 151 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 393 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 396 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 315 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 396 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 396 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 215 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 207 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 171 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 169 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 342 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 272 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 135 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 396 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 166 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 301 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 249 bp overlap
SRSF3 1 dataset
ChIP Hep-G2 GSE120104.SRSF3.Hep-G2 189 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 159 bp overlap
SUZ12 5 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 285 bp overlap
ChIP H1 ENCFF881NFR 396 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 98 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 190 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 396 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 132 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 239 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 214 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 367 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 217 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 375 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 186 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 255 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 264 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 314 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 394 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 276 bp overlap
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