chr4 : 174,216,349 – 174,216,720
371 bp 78 TFs 1 linked gene
This 371 bp open chromatin element is linked to ENSG00000289179 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289179 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:174,211,349 – 174,221,720
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 2 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 156 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 153 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 243 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 134 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 357 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 296 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 223 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 185 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 216 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 371 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 253 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 352 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 288 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 182 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 200 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 207 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 200 bp overlap
CTCF 1 dataset
ChIP B cell ENCFF506FKC 371 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 258 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 180 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 234 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 351 bp overlap
ESR1 4 datasets
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 132 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 371 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 226 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 188 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH ENCFF394HLU 148 bp overlap
EZH2 13 datasets
ChIP GM23338 ENCFF613YON 146 bp overlap
ChIP H1 ENCFF232NZA 371 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 218 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 74 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 252 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 232 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 371 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 371 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 73 bp overlap
ChIP hepatocyte ENCFF118DKH 114 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 114 bp overlap
ChIP neural progenitor cell ENCFF018MKA 284 bp overlap
ChIP neural progenitor cell ENCFF472NFV 371 bp overlap
FOXA1 5 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 272 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 201 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 191 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 246 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 245 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 292 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 178 bp overlap
ChIP SH-SY5Y ENCFF485YIB 238 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 367 bp overlap
ChIP SK-N-SH ENCFF764OZD 139 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 325 bp overlap
GATA3 11 datasets
ChIP BE2C GSE65664.GATA3.BE2C 259 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 246 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 288 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 265 bp overlap
ChIP NGP GSE65664.GATA3.NGP 248 bp overlap
ChIP SH-SY5Y ENCFF475HYF 346 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 272 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 279 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 238 bp overlap
ChIP SK-N-SH ENCFF040SSB 242 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 150 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 195 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 187 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 371 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 198 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 339 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 371 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 371 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 371 bp overlap
ChIP SK-N-SH ENCFF285GEQ 188 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JARID2 1 dataset
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 371 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 185 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 318 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 67 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 280 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 264 bp overlap
MYCN 4 datasets
ChIP Kelly GSE94822.MYCN.Kelly 289 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 260 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 208 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 116 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 371 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 129 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 292 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 138 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
PAX6 2 datasets
ChIP retina_pigment GSE60024.PAX6.retina_pigment 51 bp overlap
ChIP retina_pigment GSE60024.PAX6.retina_pigment 184 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 331 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 159 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 272 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 185 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 371 bp overlap
RARA 2 datasets
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 230 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 267 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 116 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 303 bp overlap
REST 2 datasets
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 133 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 285 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 371 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 264 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 115 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 371 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 82 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 371 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 300 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 297 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SS18 3 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 307 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 248 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 123 bp overlap
SUZ12 3 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 239 bp overlap
ChIP H1 ENCFF881NFR 371 bp overlap
ChIP MCF-7 ENCSR757EMK.SUZ12.MCF-7 371 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 148 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 290 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 253 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 308 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 155 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 246 bp overlap
TCF7L2 2 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 143 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 204 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 281 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 281 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 159 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 145 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 336 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 123 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 203 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 270 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 326 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 165 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 165 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 134 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF506 1 dataset
ChIP HEK293T GSE78099.ZNF506.HEK293T 157 bp overlap
ZNF786 1 dataset
ChIP HEK293T GSE78099.ZNF786.HEK293T 129 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 240 bp overlap
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