chr4 : 139,560,398 – 139,560,695
297 bp 71 TFs 3 linked genes
This 297 bp open chromatin element is linked to ENSG00000272717, SETD7, and ENSG00000286896 and is bound by 71 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000272717 3.6 kb Proximal Proximity
SETD7 4.2 kb Proximal Proximity
ENSG00000286896 7.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,555,398 – 139,565,695
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 77 bp overlap
BACH2 1 dataset
ChIP DOHH2 GSE69558.BACH2.DOHH2 252 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 61 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 127 bp overlap
BRD4 12 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 287 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 297 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 297 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 274 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 199 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 138 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 297 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 116 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 137 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 172 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 297 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 297 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 157 bp overlap
CBX8 2 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 188 bp overlap
ChIP K562 ENCFF485TBL 204 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 59 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 112 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 140 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 238 bp overlap
Cebpa 6 datasets
ChIP BLaER1 ENCFF093OYK 55 bp overlap
ChIP BLaER1 ENCFF274GAT 186 bp overlap
ChIP BLaER1 ENCFF335XTP 269 bp overlap
ChIP BLaER1 ENCFF419EBE 107 bp overlap
ChIP BLaER1 ENCFF460KDD 69 bp overlap
ChIP BLaER1 ENCFF844FIP 52 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 130 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 297 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 297 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 297 bp overlap
ESR1 19 datasets
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 72 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 70 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 215 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 56 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 131 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 103 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 94 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 103 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 96 bp overlap
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 52 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 200 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 118 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 74 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 90 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 50 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 106 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 54 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 75 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 106 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 120 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 70 bp overlap
ESR2 2 datasets
ChIP MDA-MB-231_LY500307 GSE108979.ESR2.MDA-MB-231_LY500307 66 bp overlap
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 222 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 73 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 111 bp overlap
EZH2 1 dataset
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 208 bp overlap
FOXA1 1 dataset
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 297 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 233 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 223 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 217 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 167 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 297 bp overlap
ChIP K562 ENCFF348IBL 136 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 297 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 266 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 170 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 227 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 155 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 297 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 186 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 297 bp overlap
KDM1A 2 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 57 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 202 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 205 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 134 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 297 bp overlap
KMT2B 1 dataset
ChIP AML GSE112074.KMT2B.AML 56 bp overlap
MAZ 4 datasets
ChIP HEK293 ENCFF994GSG 297 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 276 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 153 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 123 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 170 bp overlap
MED1 2 datasets
ChIP MDA-MB-231_LQ_45min GSE95121.MED1.MDA-MB-231_LQ_45min 122 bp overlap
ChIP MOLM-13 GSE154985.MED1.MOLM-13 195 bp overlap
MEF2B 2 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 60 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 83 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 141 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 166 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 54 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 217 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 297 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 152 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 297 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 297 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR338MMB.NR2F2.liver 99 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 97 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 107 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 170 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 283 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 165 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 127 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 54 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 297 bp overlap
PKNOX1 1 dataset
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 225 bp overlap
POLR2A 2 datasets
ChIP Raji ENCFF613VGX 91 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 94 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 77 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 152 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 84 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 253 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 59 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 261 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 110 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 297 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 185 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 176 bp overlap
ChIP HCT116 ENCFF038POZ 224 bp overlap
ZBTB40 1 dataset
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 95 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 266 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 287 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 297 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 297 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 297 bp overlap
ChIP HEK293 ENCFF944VMC 156 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 297 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 200 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 279 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 254 bp overlap
Huangfu Lab · Publications · Resources · Contact