chr1 : 80,848,050 80,849,274
1,224 bp 130 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 130 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:80,843,050 – 80,854,274
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 245 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BRD4 3 datasets
ChIP 402-91 GSE111253.BRD4.402-91 224 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 596 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 422 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 233 bp overlap
EBF3 1 dataset
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 138 bp overlap
EGR1 1 dataset
Motif DE_60h DE_60h-EGR1_MA0162.5 10 bp overlap
EN2 1 dataset
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 207 bp overlap
ESR1 1 dataset
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 281 bp overlap
ESRRA 1 dataset
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
ETS1 2 datasets
ChIP SCC-25 GSE109884.ETS1.SCC-25 227 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 227 bp overlap
Ebf2 1 dataset
Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap
FERD3L 1 dataset
Motif DE_60h DE_60h-FERD3L_MA1485.1 14 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 440 bp overlap
ChIP DE DE-GATA4-2 534 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 525 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 268 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 468 bp overlap
ChIP DE DE-GATA6-2 562 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 336 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 588 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 304 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 496 bp overlap
ChIP foregut GSE117136.GATA6.foregut 427 bp overlap
GBX1 1 dataset
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 200 bp overlap
GSPT2 2 datasets
ChIP HEK293T GSE35197.GSPT2.HEK293T 135 bp overlap
ChIP HEK293T GSE35197.GSPT2.HEK293T 197 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 144 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 183 bp overlap
KLF1 1 dataset
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF11 1 dataset
Motif DE_60h DE_60h-KLF11_MA1512.2 10 bp overlap
KLF2 1 dataset
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
LBX1 1 dataset
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
LIN54 1 dataset
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 147 bp overlap
NR1D1 1 dataset
Motif DE_60h DE_60h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap
NR5A1 1 dataset
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nkx2-1 1 dataset
Motif DE_60h DE_60h-Nkx2-1_MA1994.2 7 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
Nr2F6 1 dataset
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PAX3 2 datasets
Motif DE_60h DE_60h-PAX3_MA1546.2 14 bp overlap
Motif DE_60h DE_60h-PAX3_MA1546.2 14 bp overlap
PLAG1 1 dataset
Motif DE_60h DE_60h-PLAG1_MA0163.1 14 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
PRRX2 1 dataset
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Prdm4 1 dataset
Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RORA 1 dataset
Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 192 bp overlap
RXRB 1 dataset
Motif DE_60h DE_60h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_60h DE_60h-RXRG_MA0856.1 14 bp overlap
Rarg 1 dataset
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
Rxra 1 dataset
Motif DE_60h DE_60h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 371 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 316 bp overlap
SOX13 1 dataset
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 301 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 543 bp overlap
SOX2 3 datasets
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 389 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 123 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TCF7 1 dataset
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TEAD1 1 dataset
ChIP CCLP1 GSE62272.TEAD1.CCLP1 238 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 358 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 160 bp overlap
TFAP2B 1 dataset
Motif DE_60h DE_60h-TFAP2B_MA0813.1 13 bp overlap
TFAP4 1 dataset
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 316 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZBTB6 1 dataset
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 90 bp overlap
ZNF547 1 dataset
ChIP HEK293 GSE76494.ZNF547.HEK293 215 bp overlap
ZNF574 1 dataset
Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap
ZNF586 1 dataset
ChIP HEK293 GSE76494.ZNF586.HEK293 215 bp overlap
ZNF667 1 dataset
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
ZNF675 1 dataset
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Zfx 1 dataset
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap